PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OWM86589.1
Organism
Punica granatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica
Family C3H
Protein Properties Length: 354aa    MW: 39097 Da    PI: 7.6979
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OWM86589.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH25.62.1e-08119139526
                 --SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                  C++f++ G Ck Gd+C FaHg
  OWM86589.1 119 ACPDFRK-GVCKKGDSCEFAHG 139
                 7******.*************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 354 aa     Download sequence    
MMIGEVARSN PTVQIPPWDP YDDLTAGVHS PYSVPSPTGD YLAALHRYLP SNEPDSLEPE  60
QADPELLNEF LCDHFRMYVF KVRRCARGRS HDWTECPYAH PGEKARRRDP RRFQYSGTAC  120
PDFRKGVCKK GDSCEFAHGV FECWLHPDRY RTQPCKDGPN CRRRVCFFAH SPDQLRILPQ  180
QPSPGSVESD YSSPGRLGPD THHLTKPGSF LSSPTSILTS PPISPPSDSP PMSPSGLNSV  240
SELVSSMRGL SFGKAKLSQR AHFASGFGPT RCSTLRPGSY MGNLMPSTPT RSGLGGGFDL  300
LESPFKEEPA MERVESGRDI RAKIYAKLSR ENSLDLVDAP GSGPDVGWVS ELVK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G19810.11e-114C3H family protein