PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OWM86866.1

Organism

Punica granatum

Taxonomic ID

22663

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica

Family

LBD

Protein Properties

Length: 202aa MW: 22202 Da PI: 8.4063

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OWM86866.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	144.5	3e-45	10	109	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 +CaaCk+lrrkC+++Cv+apyfp +qp+kfanvhk+FGasnv+kll++l +++reda++sl+yeA++r+rdPvyG+vgvi+ lq+ql+ql+ +l+ +k+ OWM86866.1 10 PCAACKFLRRKCQPECVFAPYFPPDQPQKFANVHKVFGASNVTKLLNELLPHQREDAVNSLAYEADMRLRDPVYGCVGVISLLQHQLRQLQLDLSCAKS 108 7*********************************************************************************************99988 PP DUF260 100 e 100 e OWM86866.1 109 E 109 7 PP

Sequence ? help Back to Top
Protein Sequence Length: 202 aa Download sequence
MASSTSSTSP CAACKFLRRK CQPECVFAPY FPPDQPQKFA NVHKVFGASN VTKLLNELLP 60 HQREDAVNSL AYEADMRLRD PVYGCVGVIS LLQHQLRQLQ LDLSCAKSEL SKYQNLGLIN 120 HHQNLGINNL IAAAGGGGGG AAHHHHHQFF PRDRHHHHQA IAMNSYDAAS SLLAMNVSAS 180 LGGQFHHTPR ADDRSRNIID PS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G65620.3	7e-69	LBD family protein