PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OWM86901.1

Organism

Punica granatum

Taxonomic ID

22663

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica

Family

ARF

Protein Properties

Length: 1126aa MW: 124119 Da PI: 6.6572

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OWM86901.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	71.5	1.1e-22	139	240	1	99
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 f+k+lt sd++++g +++p++ ae++ + +++ ++l+ +d++ ++W++++iyr++++r++lt+GW+ Fv+ ++L +gD+v+F ++++++l OWM86901.1 139 FCKTLTASDTSTHGGFSVPRRAAEKIfptldfsM-QPPA-QELMARDLHDNVWTFRHIYRGQPKRHLLTTGWSLFVSGKRLFAGDSVLFI--RDEKQQL 233 99***************************954.5444.48********************************************..5688889 PP EEEEE-S CS B3 93 vvkvfrk 99 +++++r+ OWM86901.1 234 LLGIRRA 240 **997 PP
2	Auxin_resp	120.3	1.5e-39	265	348	1	83
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aahaa+++s+F+v+YnPras+seFv++++k+ ka++ +++s+GmRf+m+feteds +rr++Gt++g+sdld+vrW+nS+Wr+L+ OWM86901.1 265 AAHAAANNSPFTVFYNPRASPSEFVIPLAKYYKAVYgNQISLGMRFRMMFETEDSGTRRYMGTITGISDLDSVRWKNSQWRNLQ 348 79********************************9*******************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 1126 aa Download sequence
MKTPPTGAGA APAATAAPNP CEGVGAEKKS VINPELWQAC AGPLVNLPPA GTQVVYFPQG 60 HSEQVAASMK KVVDAQIPNY PNLPSKLLCS LHSVTLHADP DTDEVFAKMI LRPVSSFDKE 120 ALLRSDLALK TGKPQPEFFC KTLTASDTST HGGFSVPRRA AEKIFPTLDF SMQPPAQELM 180 ARDLHDNVWT FRHIYRGQPK RHLLTTGWSL FVSGKRLFAG DSVLFIRDEK QQLLLGIRRA 240 NRQPTNLSSS VLSSDSMHIG ILAAAAHAAA NNSPFTVFYN PRASPSEFVI PLAKYYKAVY 300 GNQISLGMRF RMMFETEDSG TRRYMGTITG ISDLDSVRWK NSQWRNLQVG WDESTTGEKR 360 TRVSVWEIEP VTAPFFICPT PFFRSKRPRQ PGMPDDEFSD LDSLFKRTMP WLGDDMGIKD 420 PQSLPGLSLM QMQWMNMQQN SSLANSMQPG YLNSLPGSVL QNLAGTDLSR QLGFSAPQIA 480 SPNNLQFNAT RLPQQAPQQQ QQQQQLDQLG KIPSTLSSLS SVVQPQQQMG EILQITQQTR 540 QNLINQAPQL LQPQNLVQPS STILQQPPSI QNQQFRNPPQ NLQQQPQQSS MMSQSQQQNL 600 TPLQLPDQLN PQLQQMADNQ IQIQMLQKLQ QQQQSILAQQ SAMQQQTTQL NQLPDQRQLL 660 EVSHSFSKTV GPGQMLEQLP QTATSNLLSQ SNLMPQQQMT KNNSSSQMTV NVRFANPPQQ 720 PKLPQEQASL LPEVQMNTGL PPTSTMNHNL VPGGSMLGAG PGPSVITDDA PSCSTSPSAG 780 NGPSSFVQPI MNNSRVHRSG SMGEDMAQSN PSFLSPNTLG SMIKDSQPKC EVKPSLNISK 840 TQNNGFFNPQ AYLNGGTTQT DYLDTSSSTT SVCLSQNDVH LQQNNNTPPS YQQQGMMFRD 900 TNHDGEVQGD MRGSVSVPFN SNIDGHLGIP MSSDPLLGKG MGGLGKDFTN DLPSAGILPE 960 YDNSKDPQQL SSSMVSQSFG VHDVAFNSID PTINDSTFLS RGTWAPPPQY QRMRTYTKVY 1020 KRGAVGRSID ITRYSGYDEL KQDLARRFGI EGQLEEGQRI GWKLVYVDHE NDVLLVGDDP 1080 WEEFVNCVRC IKILSPQEVQ QMSLDGDFRN GLLPNQACSS SDGGNA

Sequence ? help Back to Top

Protein Sequence Length: 1126 aa Download sequence

MKTPPTGAGA APAATAAPNP CEGVGAEKKS VINPELWQAC AGPLVNLPPA GTQVVYFPQG  60
HSEQVAASMK KVVDAQIPNY PNLPSKLLCS LHSVTLHADP DTDEVFAKMI LRPVSSFDKE  120
ALLRSDLALK TGKPQPEFFC KTLTASDTST HGGFSVPRRA AEKIFPTLDF SMQPPAQELM  180
ARDLHDNVWT FRHIYRGQPK RHLLTTGWSL FVSGKRLFAG DSVLFIRDEK QQLLLGIRRA  240
NRQPTNLSSS VLSSDSMHIG ILAAAAHAAA NNSPFTVFYN PRASPSEFVI PLAKYYKAVY  300
GNQISLGMRF RMMFETEDSG TRRYMGTITG ISDLDSVRWK NSQWRNLQVG WDESTTGEKR  360
TRVSVWEIEP VTAPFFICPT PFFRSKRPRQ PGMPDDEFSD LDSLFKRTMP WLGDDMGIKD  420
PQSLPGLSLM QMQWMNMQQN SSLANSMQPG YLNSLPGSVL QNLAGTDLSR QLGFSAPQIA  480
SPNNLQFNAT RLPQQAPQQQ QQQQQLDQLG KIPSTLSSLS SVVQPQQQMG EILQITQQTR  540
QNLINQAPQL LQPQNLVQPS STILQQPPSI QNQQFRNPPQ NLQQQPQQSS MMSQSQQQNL  600
TPLQLPDQLN PQLQQMADNQ IQIQMLQKLQ QQQQSILAQQ SAMQQQTTQL NQLPDQRQLL  660
EVSHSFSKTV GPGQMLEQLP QTATSNLLSQ SNLMPQQQMT KNNSSSQMTV NVRFANPPQQ  720
PKLPQEQASL LPEVQMNTGL PPTSTMNHNL VPGGSMLGAG PGPSVITDDA PSCSTSPSAG  780
NGPSSFVQPI MNNSRVHRSG SMGEDMAQSN PSFLSPNTLG SMIKDSQPKC EVKPSLNISK  840
TQNNGFFNPQ AYLNGGTTQT DYLDTSSSTT SVCLSQNDVH LQQNNNTPPS YQQQGMMFRD  900
TNHDGEVQGD MRGSVSVPFN SNIDGHLGIP MSSDPLLGKG MGGLGKDFTN DLPSAGILPE  960
YDNSKDPQQL SSSMVSQSFG VHDVAFNSID PTINDSTFLS RGTWAPPPQY QRMRTYTKVY  1020
KRGAVGRSID ITRYSGYDEL KQDLARRFGI EGQLEEGQRI GWKLVYVDHE NDVLLVGDDP  1080
WEEFVNCVRC IKILSPQEVQ QMSLDGDFRN GLLPNQACSS SDGGNA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G19220.1	0.0	ARF family protein