PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OWM86933.1

Organism

Punica granatum

Taxonomic ID

22663

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica

Family

Whirly

Protein Properties

Length: 242aa MW: 26879.9 Da PI: 9.9557

Description

Whirly family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OWM86933.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Whirly	194.7	1.4e-60	66	202	2	137
Whirly 2 vyktkaalkvkavrptfealdsgn.lklkraGglllelanataerkydWekkqsfalsatevaelvdlaskesceffhdpaakgsneGkvrkalkvePl 99 vyk+kaal++ +v+ptf++l+sgn l+++r+G +++++ +a++erkydWek+q falsate++ +++l++ +sceffhdp++k+sn+G+vrk+l+++P+ OWM86933.1 66 VYKGKAALSLTPVLPTFTKLESGNgLRVDRRGNMMMKFWPAIGERKYDWEKRQLFALSATEIGAFISLGPTDSCEFFHDPSMKTSNAGQVRKSLSIKPH 164 9*******************98679******************************************************************** PP Whirly 100 pdGsGlfvnlsvtnslvkgnesfsvPvskaefavlrsl 137 dGsG+f++lsv n+l+k+ ++++vPv+ aefav++++ OWM86933.1 165 QDGSGYFISLSVVNNLLKSMDRITVPVTTAEFAVMKTA 202 **********************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 242 aa Download sequence
MKTSLFSSIL SRRISLAEIF VPCNVGHLRD ALGGHACMRN AAYSTGGQNF AATGSIMDRI 60 FAPYTVYKGK AALSLTPVLP TFTKLESGNG LRVDRRGNMM MKFWPAIGER KYDWEKRQLF 120 ALSATEIGAF ISLGPTDSCE FFHDPSMKTS NAGQVRKSLS IKPHQDGSGY FISLSVVNNL 180 LKSMDRITVP VTTAEFAVMK TACSFALPHI MGWDRYTSHQ RPRVGENPSK VNPQMLDSEW 240 DR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G71260.1	5e-90	Whirly family protein