PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OWM87012.1

Organism

Punica granatum

Taxonomic ID

22663

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica

Family

AP2

Protein Properties

Length: 597aa MW: 65011.1 Da PI: 7.5684

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OWM87012.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	34.5	5.1e-11	204	260	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++gr++A+++d + ++ k + g ++ +++Aa+a++ a++k++g OWM87012.1 204 SIYRGVTRHRWTGRYEAHLWDnSCR-RegQSrKGRQ-GGYDKEDKAARAYDLAALKYWG 260 57*****************5444.2455535555.7799999***********98 PP
2	AP2	47.6	4.3e-15	303	354	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV+++++ grW A+I + +k +lg+f t eeAa+a++ a+ k++g OWM87012.1 303 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 354 57**************988532...5***********************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 597 aa Download sequence
MSSNINMDTT NPLHHHQQHQ NWLGFSLSNT SSSPHHHHHH HHDSATSHSH HLSLFEAFTS 60 SSTSSSTPGS AVDVSREEDP HHHHATTAGG ATTVDLSMFG SGGGVRKLED FLGGGGGATA 120 QQQPQLSHFP VEVATTVVSI PEVAEYDSEL KTIAASFLRG FSSSDDQQKQ PQQQQQQQQQ 180 LVVAPPPSDL NPKKTLDTFG QRTSIYRGVT RHRWTGRYEA HLWDNSCRRE GQSRKGRQGG 240 YDKEDKAARA YDLAALKYWG PTTTTNFPIS NYEKELEEMK HMTRQEFVAS LRRKSSGFSR 300 GASIYRGVTR HHQHGRWQAR IGRVAGNKDL YLGTFSTQEE AAEAYDIAAI KFRGPNAVTN 360 FDMSRYDVKS IMNRNLPIGG MSGKSKNGSD TTSDSRSGSR SDELDPSSAS SLTFTSQPPS 420 STLSFAIPIK QDTSSDCWSN IFGYQQTGQT TLNQTQIPSL NNSKNENPPP AHNITTPASS 480 GLFLNVPSAI SSYGMDFVIG QGGSPNPSHS GLFLFNGGYN NFHHQQSENS PASVPPLIPF 540 ATPIALNCNN NNTNNAASNS GSSWNSGNGT SIAPSLHSIQ AAKPNLSMFQ TPIFGME

Sequence ? help Back to Top

Protein Sequence Length: 597 aa Download sequence

MSSNINMDTT NPLHHHQQHQ NWLGFSLSNT SSSPHHHHHH HHDSATSHSH HLSLFEAFTS  60
SSTSSSTPGS AVDVSREEDP HHHHATTAGG ATTVDLSMFG SGGGVRKLED FLGGGGGATA  120
QQQPQLSHFP VEVATTVVSI PEVAEYDSEL KTIAASFLRG FSSSDDQQKQ PQQQQQQQQQ  180
LVVAPPPSDL NPKKTLDTFG QRTSIYRGVT RHRWTGRYEA HLWDNSCRRE GQSRKGRQGG  240
YDKEDKAARA YDLAALKYWG PTTTTNFPIS NYEKELEEMK HMTRQEFVAS LRRKSSGFSR  300
GASIYRGVTR HHQHGRWQAR IGRVAGNKDL YLGTFSTQEE AAEAYDIAAI KFRGPNAVTN  360
FDMSRYDVKS IMNRNLPIGG MSGKSKNGSD TTSDSRSGSR SDELDPSSAS SLTFTSQPPS  420
STLSFAIPIK QDTSSDCWSN IFGYQQTGQT TLNQTQIPSL NNSKNENPPP AHNITTPASS  480
GLFLNVPSAI SSYGMDFVIG QGGSPNPSHS GLFLFNGGYN NFHHQQSENS PASVPPLIPF  540
ATPIALNCNN NNTNNAASNS GSSWNSGNGT SIAPSLHSIQ AAKPNLSMFQ TPIFGME

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G57390.1	1e-134	AP2 family protein