PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OWM87035.1

Organism

Punica granatum

Taxonomic ID

22663

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica

Family

MYB

Protein Properties

Length: 249aa MW: 28816.4 Da PI: 9.4519

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OWM87035.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	59.8	6.1e-19	20	67	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd+ll+++v+++G g+W++++r g++R +k+c++rw +yl OWM87035.1 20 KGPWTAEEDKLLIEYVRLHGEGRWNSVSRLTGLKRNGKSCRLRWVNYL 67 79****************************9***********97 PP
2	Myb_DNA-binding	53.7	4.7e-17	73	117	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg T+ E+ ++v++++++G++ W+tIar ++ gRt++++k++w+++ OWM87035.1 73 RGQITPHEENIIVELHARWGNR-WSTIARSLP-GRTDNEIKNYWRTH 117 7888****************.*****.**********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 249 aa Download sequence
MSWVSSMGGW GALEVEGWRK GPWTAEEDKL LIEYVRLHGE GRWNSVSRLT GLKRNGKSCR 60 LRWVNYLRPD LKRGQITPHE ENIIVELHAR WGNRWSTIAR SLPGRTDNEI KNYWRTHFKN 120 KAKIPAATSE KAKARILKRQ HFQQQQLQHQ QQQPHQLQLN QVDLKRIMSM LDDTDHNRVP 180 YVPQEVQVAP ASYNIFNNIT DTPSASEASN EDFLWDGLWN LDDFHGGNNF GVSCTNSKAC 240 VQNLISPFC

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24310.1	1e-89	MYB family protein