PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OWM87072.1
Organism
Punica granatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica
Family M-type_MADS
Protein Properties Length: 234aa    MW: 27151.1 Da    PI: 8.6232
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OWM87072.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF54.71.3e-175498145
                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
      SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                k+ie++  r vtfskRr gi KKA+EL ++C+aev ++ifs++g+
  OWM87072.1 54 KKIEDDDDRLVTFSKRRYGIYKKASELVTMCGAEVGMVIFSTSGR 98
                68****************************************997 PP
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    
MPALYIYYER RSDYAVYILQ ETLRLSIHHL HFSSVENMAS TSKQTQGRQK IEMKKIEDDD  60
DRLVTFSKRR YGIYKKASEL VTMCGAEVGM VIFSTSGRPF SFGHPLMESI INKFLKRNVG  120
LSTDKRLQAI LDARRRMRID QHNDSYNELL EQLDAEKDRG LALKQITRAT KEGNPKNWEL  180
GWWERPLDEL TLPELVKVAS AMEAFHKDLC SYLNHSNDLA APATDIPWLT IQRI
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.19e-37M-type_MADS family protein