PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OWM87374.1

Organism

Punica granatum

Taxonomic ID

22663

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica

Family

LBD

Protein Properties

Length: 252aa MW: 27450.4 Da PI: 8.6718

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OWM87374.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	127.9	4.6e-40	74	173	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 +CaaC++lrr+Ca++C+++pyf ++p+kfa+vhk+FGasnv+k+l ++pe++r d+++slvyeA r++dPvyG+vg i+ lq+q+++l++el+++++ OWM87374.1 74 PCAACRLLRRRCAPECPFSPYFSPNEPHKFACVHKVFGASNVSKMLMEVPEDQRADTADSLVYEATLRLKDPVYGCVGAISVLQHQVQCLETELNAVRA 172 7***********************************************************************************************998 PP DUF260 100 e 100 e OWM87374.1 173 E 173 7 PP

Sequence ? help Back to Top
Protein Sequence Length: 252 aa Download sequence
MMSGEREVKQ DVHTLLTGRK VIKRETIDAR SHHRHEETMS REQMMLKSAP SAAAASGGGG 60 GGETLMTKTN TITPCAACRL LRRRCAPECP FSPYFSPNEP HKFACVHKVF GASNVSKMLM 120 EVPEDQRADT ADSLVYEATL RLKDPVYGCV GAISVLQHQV QCLETELNAV RAEILRYKLR 180 NARIMAPPSP PTHESINVPI SRPFSMDAPP SAPPLPPSLP PAAYSGLSVF THANTSSSQY 240 STVSGKNLAY FG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G30340.1	6e-50	LBD family protein