PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OWM87467.1
Organism
Punica granatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica
Family C2H2
Protein Properties Length: 248aa    MW: 27272.9 Da    PI: 8.9611
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OWM87467.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2157.3e-055173123
                EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                y+C+ C++ F++   L  H+++H
  OWM87467.1 51 YSCSFCNREFRSAQALGGHMNVH 73
                99*******************99 PP
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    
MELAHQYLMS MKRRGLLRPP QLCGNFSWEE KAFADDTSGV LGGIVWPPRS YSCSFCNREF  60
RSAQALGGHM NVHRRDRARL KQSLITTTTT SSAATPGEVQ ILQHQSRPNF SSPLQLPIRT  120
RVSPVSSSKE NNGDGSCIPC PNDPLMARKG SFDLLLRKEE PTCFDHGSDD TTLSVGLNDT  180
VMGPRAFGHN GEMSFKKPKT STSSPLALYL RPCSSDRSCS LQSSTGLKVG SVEDLDLELR  240
LGDPRKVK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06070.13e-29C2H2 family protein