PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OWM87567.1
Organism
Punica granatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica
Family LBD
Protein Properties Length: 220aa    MW: 23980.3 Da    PI: 7.2169
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OWM87567.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260135.81.6e-42651641100
      DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 
                 +CaaCk+lrr+C+++Cvlapyfp ++p kf ++h++FGasn++k+l++lpe++r da+ss+vyeA+ar+rdPvyG++g i +lq+q+++l+a+la+ ++
  OWM87567.1  65 PCAACKILRRRCVDKCVLAPYFPPTEPYKFTIAHRVFGASNIIKFLQELPESQRADAVSSMVYEANARLRDPVYGCAGSICHLQKQVSELQAQLAKSQA 163
                 7**********************************************************************************************9998 PP

      DUF260 100 e 100
                 e
  OWM87567.1 164 E 164
                 7 PP
Sequence ? help Back to Top
Protein Sequence    Length: 220 aa     Download sequence    
MENPTTKATS QTPVITIPST PLISCSTSSS SSSPRRQTSL SPTATPTTTS PPTQPPSLQP  60
VVLSPCAACK ILRRRCVDKC VLAPYFPPTE PYKFTIAHRV FGASNIIKFL QELPESQRAD  120
AVSSMVYEAN ARLRDPVYGC AGSICHLQKQ VSELQAQLAK SQAELLNLQA QHTNLVALIC  180
MEMSGKYNNS SQEPNVDQLL DMSCFLDDNV SSSTWESLWA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07900.11e-72LBD family protein