PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OWM88013.1

Organism

Punica granatum

Taxonomic ID

22663

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica

Family

MYB

Protein Properties

Length: 293aa MW: 32922.4 Da PI: 6.3083

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OWM88013.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	58.5	1.5e-18	8	55	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT eEd+ l+++++++G g+W++ ar g++Rt+k+c++rw++yl OWM88013.1 8 RGPWTVEEDLTLINYIALHGEGRWNSLARSAGLKRTGKSCRLRWLNYL 55 89********************************************97 PP
2	Myb_DNA-binding	50.7	4.2e-16	61	104	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+ T eE++l+++++ ++G++ W++Ia++++ gRt++++k++w++ OWM88013.1 61 RGNITLEEQLLILELHSRWGNR-WSKIAQYLP-GRTDNEIKNYWRT 104 7999****************.*****.*********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 293 aa Download sequence
MGMEELRRGP WTVEEDLTLI NYIALHGEGR WNSLARSAGL KRTGKSCRLR WLNYLRPDVR 60 RGNITLEEQL LILELHSRWG NRWSKIAQYL PGRTDNEIKN YWRTRVQKHA KQLQCDVNSK 120 QFKDTMRYLW MPRLVERIQA ASGSAASCPA PAASSGVTSP GGSTITTMTG SGNHHFDNKI 180 ESSSLGASHG VILENSSTSV SSSSDSFGAQ QVSPISELTD YYPIPVNENP DPDYFYTSQG 240 GGYQLDQTLA GPCEGYYNNY GLLDFQPTEH NNNYHYWDGG DASGNLWTVE DIW

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G06490.1	4e-86	MYB family protein