PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OWM88061.1
Organism
Punica granatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica
Family GRAS
Protein Properties Length: 573aa    MW: 64613.6 Da    PI: 5.8116
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OWM88061.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS283.75.4e-872015711374
        GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svselykal.ppsetsekn.sseelaalklfsevsPilkfshl 96 
                 l+elLl cAe v+ +++ +a++lL++ s l s++g+p+qRl++yf+eAL++r+ r ++  + + + + +e +++  + +   ++ ++++  P+ +++++
  OWM88061.1 201 LIELLLVCAEKVTYRQFDRARNLLNQCSYLFSNQGTPVQRLVHYFAEALHERIDReTGRLVLDDFwKINELTRDLlVMNPNRSRIALHQEIPFSQVAQF 299
                 6799***************************************************5555566666577777766655555666666************* PP

        GRAS  97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLr 195
                 t  qaI e v  ++r+H iD+ i+ G++W  L+qaL +  ++   l+iT++g  +s+s++ +e tg+rL++fA ++++pf+f+++++++l+dl+ ++L+
  OWM88061.1 300 TGLQAIIEKVTDAKRIHAIDMCIGSGAHWTILMQALQN--SELELLKITAIGT-HSQSQHLMEVTGKRLESFAGAMNLPFSFRLVIVDDLSDLKEDHLK 395
                 ************************************87..7888*********.66799999************************************* PP

        GRAS 196 vkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgrei 294
                 v+ +E l+V +++ l +l  +    +++ d+++k++ +l+P ++vv+e +a+hns+sF++rf+e+l ++ a fd+le+ + r +e+r  vE +++g++i
  OWM88061.1 396 VDFKERLVVYSQYYLRTLIGR----PNQLDALMKVIAKLNPSLMVVTEPDANHNSPSFVDRFIETLFFFCAYFDCLETYMKRLDENRLAVESFYFGESI 490
                 ******************944....445666******************************************************************** PP

        GRAS 295 vnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                 +n+va+eg+er+ r+ +   Wr+ + ++G+ + +ls +   qa+l+ +++  ++  +++ + +sl+ gWk+ p++s+S+W+
  OWM88061.1 491 KNIVATEGDERTVRNVKIDVWRAFFARFGMVEDELSPSSLYQASLVTKRFRaGRFCTLDRNGKSLIVGWKNTPILSLSVWK 571
                 ***************************************************8887899999999****************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 573 aa     Download sequence    
MASAMFSSGE FNFGVGGGGG GGEKLVSGKR VDNDAEFEFH HGVKPVDEDF FFSKYQQQER  60
IQQNLVFDQG LLDDFMLGAL ESQPVCMSSK GAADPGDHGV GNVEQKKDRR CSSSMASLEL  120
LRSYGNGVKK LDGDRIVQPR GEEELNENSV AERLSIEGIA RLAGVKFVQG PSSTMDVHSV  180
LGPFGLAFAG LSDEEKQEVQ LIELLLVCAE KVTYRQFDRA RNLLNQCSYL FSNQGTPVQR  240
LVHYFAEALH ERIDRETGRL VLDDFWKINE LTRDLLVMNP NRSRIALHQE IPFSQVAQFT  300
GLQAIIEKVT DAKRIHAIDM CIGSGAHWTI LMQALQNSEL ELLKITAIGT HSQSQHLMEV  360
TGKRLESFAG AMNLPFSFRL VIVDDLSDLK EDHLKVDFKE RLVVYSQYYL RTLIGRPNQL  420
DALMKVIAKL NPSLMVVTEP DANHNSPSFV DRFIETLFFF CAYFDCLETY MKRLDENRLA  480
VESFYFGESI KNIVATEGDE RTVRNVKIDV WRAFFARFGM VEDELSPSSL YQASLVTKRF  540
RAGRFCTLDR NGKSLIVGWK NTPILSLSVW KFT
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01570.19e-56GRAS family protein