PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OWM88151.1

Organism

Punica granatum

Taxonomic ID

22663

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica

Family

C3H

Protein Properties

Length: 368aa MW: 41745.2 Da PI: 6.2008

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OWM88151.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	37.5	4e-12	202	227	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 y +C+++ +tG+C yGd CkF+H+ OWM88151.1 202 YQPDICKDYKETGYCGYGDACKFMHD 227 66789********************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 368 aa Download sequence
MADSDKAQPA DTGGKAEQSS EMQQSDPVCN FFRKPLKNKN MRKRTVVEDE DEDSEADGSL 60 LHVQKKPQKM DNKLYFSTGS SKQSAHESES KGQSQAPVFH FDSSREIQVE NDSRATATLE 120 TETEFTRDAR AIRERVLKQS NDAISGKGKS ASDEKLYKGI HGYTDYKAGF RREQTVSSEK 180 AGGAHGPLRA SAHIRVSARF DYQPDICKDY KETGYCGYGD ACKFMHDRGD YKSGWQLEKD 240 WEEAEKARKR KLAMGVDDQD EEDEDDDEDE DALPFACFIC RQPFVDPVVT KCKHYFCEHC 300 ALKHHAKNKK CFVCNTPTHG IFNAAHEIRG HRCELLVSFV SQYLGNHGAW EPDMLHPQLI 360 SLFARDYV

Sequence ? help Back to Top

Protein Sequence Length: 368 aa Download sequence

MADSDKAQPA DTGGKAEQSS EMQQSDPVCN FFRKPLKNKN MRKRTVVEDE DEDSEADGSL  60
LHVQKKPQKM DNKLYFSTGS SKQSAHESES KGQSQAPVFH FDSSREIQVE NDSRATATLE  120
TETEFTRDAR AIRERVLKQS NDAISGKGKS ASDEKLYKGI HGYTDYKAGF RREQTVSSEK  180
AGGAHGPLRA SAHIRVSARF DYQPDICKDY KETGYCGYGD ACKFMHDRGD YKSGWQLEKD  240
WEEAEKARKR KLAMGVDDQD EEDEDDDEDE DALPFACFIC RQPFVDPVVT KCKHYFCEHC  300
ALKHHAKNKK CFVCNTPTHG IFNAAHEIRG HRCELLVSFV SQYLGNHGAW EPDMLHPQLI  360
SLFARDYV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G01350.1	1e-151	C3H family protein