PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OWM88221.1

Organism

Punica granatum

Taxonomic ID

22663

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica

Family

MYB

Protein Properties

Length: 293aa MW: 32427.8 Da PI: 8.4848

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OWM88221.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	53.1	7.4e-17	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT++Ede+l++ +++ G g+W+ ++ g++R++k+c++rw +yl OWM88221.1 14 KGPWTPDEDEILINFIAKNGHGNWRYLPKLAGLRRCGKSCRLRWANYL 61 79********************************************97 PP
2	Myb_DNA-binding	47.8	3.4e-15	67	110	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg++T++E++l ++++ +lG++ W++Ia+ ++ gRt++++k+ w++ OWM88221.1 67 RGPFTPDEEQLVIQLHGMLGNR-WAAIAAQLP-GRTDNEIKNLWNS 110 89******************.*****.*********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 293 aa Download sequence
MGRAPCCDRR NLKKGPWTPD EDEILINFIA KNGHGNWRYL PKLAGLRRCG KSCRLRWANY 60 LRPDIKRGPF TPDEEQLVIQ LHGMLGNRWA AIAAQLPGRT DNEIKNLWNS CLKKRLLCMG 120 IGPSTHKPLF FQGTKIRASS ASVTTGHVAQ CESARLEAGA RLSKDSSFVS SLQIPQRMEP 180 DYFLLMWNSE VGESFRKLPR GAGNETVTDS TISQASSSVK IESNSPATGT GPATSAWAPR 240 WSDGPKFETD YSSSSEFESS SDTALQMLLE FPINNDMSFL EGTIMDIAPL LPS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G61250.1	1e-104	MYB family protein