PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OWM88233.1

Organism

Punica granatum

Taxonomic ID

22663

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica

Family

MYB

Protein Properties

Length: 482aa MW: 53289.3 Da PI: 9.0508

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OWM88233.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	40.8	5e-13	40	82	3	46
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 WT+e d++l++av+++ ++Wk+Ia++++ g ++ qc +rwqk OWM88233.1 40 IWTEEADKKLAQAVEKHCAKNWKAIANEIP-GCSDIQCLHRWQK 82 5***************************.**********8 PP
2	Myb_DNA-binding	38.5	2.7e-12	82	124	7	48
HHHHHHHHHHHHTTTT..-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 7 eEdellvdavkqlGgg..tWktIartmgkgRtlkqcksrwqkyl 48 Ed++l+++v++ + +W++Ia++++ R +kqc++rw+++l OWM88233.1 82 KEDDRLIQLVHKQDTSnlNWSKIAKHVQ-SRGGKQCRERWYNHL 124 69**********99********.***********97 PP
3	Myb_DNA-binding	39.8	1e-12	131	172	2	45
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 ++WT eE+ +l a k++G++ W+ Ia+ ++ gRt++ +k+ w+ OWM88233.1 131 NPWTREEEFILDSAQKKYGNK-WAEIAKSLP-GRTENAIKNLWN 172 79*****************.*****.*******998 PP

Sequence ? help Back to Top
Protein Sequence Length: 482 aa Download sequence
MEEESTECIL TQEATLEPSG TCRKGLRRTT GPMKRSANGI WTEEADKKLA QAVEKHCAKN 60 WKAIANEIPG CSDIQCLHRW QKEDDRLIQL VHKQDTSNLN WSKIAKHVQS RGGKQCRERW 120 YNHLRPGINT NPWTREEEFI LDSAQKKYGN KWAEIAKSLP GRTENAIKNL WNSSFKNRAE 180 HPSTSCPDRS SSPVTTERGS RNPEATPDMD LPLKKRKSCG APRDEANRIA ICASDTASDG 240 EDIAVSASTC KRYSHGDSDL EYDHLTAYYA KTKSSSIQIA PTVSSLTMRS DDHATPSCPE 300 KEANKRDDPI PSLSEPLMPS PVASARSRKS LCKFIHLNSF LLPKRCLSPN RWIIEPSRSR 360 TKPASPHTPS GHDEGSSADL GNATSWLRSA ASSFKNRPSI ISRPRARANK KSHRSPAGES 420 TEDSDSSIFD FNSSVKSKSK QVNISPTSMT AQENGTSAAG KPLRRSLEDA FDSAADVADN 480 VS

Sequence ? help Back to Top

Protein Sequence Length: 482 aa Download sequence

MEEESTECIL TQEATLEPSG TCRKGLRRTT GPMKRSANGI WTEEADKKLA QAVEKHCAKN  60
WKAIANEIPG CSDIQCLHRW QKEDDRLIQL VHKQDTSNLN WSKIAKHVQS RGGKQCRERW  120
YNHLRPGINT NPWTREEEFI LDSAQKKYGN KWAEIAKSLP GRTENAIKNL WNSSFKNRAE  180
HPSTSCPDRS SSPVTTERGS RNPEATPDMD LPLKKRKSCG APRDEANRIA ICASDTASDG  240
EDIAVSASTC KRYSHGDSDL EYDHLTAYYA KTKSSSIQIA PTVSSLTMRS DDHATPSCPE  300
KEANKRDDPI PSLSEPLMPS PVASARSRKS LCKFIHLNSF LLPKRCLSPN RWIIEPSRSR  360
TKPASPHTPS GHDEGSSADL GNATSWLRSA ASSFKNRPSI ISRPRARANK KSHRSPAGES  420
TEDSDSSIFD FNSSVKSKSK QVNISPTSMT AQENGTSAAG KPLRRSLEDA FDSAADVADN  480
VS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G02320.2	2e-51	MYB family protein