PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OWM88269.1
Organism
Punica granatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica
Family MYB
Protein Properties Length: 311aa    MW: 34844.3 Da    PI: 7.6098
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OWM88269.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding635.8e-201562148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+WT+eEde+l ++v ++G g+W++ +r  g++R++k+c++rw +yl
       OWM88269.1 15 RGPWTPEEDEKLSEYVSKHGHGSWRALPRLAGLNRCGKSCRLRWMNYL 62
                     89********************************************97 PP
2Myb_DNA-binding57.33.6e-1868113148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg++++eE+ l+v+++   G++ W++Ia++++ gRt++++k++w+++l
       OWM88269.1  68 RGNFSEEEERLIVHLHSIVGNK-WAKIASHLP-GRTDNEIKNHWNTHL 113
                      89********************.*********.************996 PP
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    
MGRPPCRAEE NGVKRGPWTP EEDEKLSEYV SKHGHGSWRA LPRLAGLNRC GKSCRLRWMN  60
YLRPDIKRGN FSEEEERLIV HLHSIVGNKW AKIASHLPGR TDNEIKNHWN THLRKKLLQK  120
GIDPKTHKPI LANQIPNDLL VNLIIAQSLQ GPNNNDNLGS SSVMSSTPWE QIIATELTKI  180
QLAHNLLQFI SPNTTPTMDC SANHSTLLGP YSNTANYSSA SQNNIMPGSS VNPNPVNLHQ  240
IMNSWATSEP GSLELPAMWA PWSFKESTEC TRTTGSRSLT KSSNASIDPF EDLEKLMDDD  300
TCASFLRDFL E
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17785.18e-79MYB family protein