PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OWM88273.1

Organism

Punica granatum

Taxonomic ID

22663

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica

Family

C3H

Protein Properties

Length: 354aa MW: 37830.6 Da PI: 7.064

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OWM88273.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	21.3	4.8e-07	85	109	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt+lC+ f+ GtC+y +C+FaH+ OWM88273.1 85 FKTKLCCKFRS-GTCPYITNCNFAHS 109 69*****99.***********8 PP
2	zf-CCCH	18.6	3.3e-06	153	178	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 yk + C+ f+ C+yGd+C+F H+ OWM88273.1 153 YKGRHCKKFYTEEGCPYGDNCTFLHD 178 78888********************7 PP
3	zf-CCCH	42.3	1.3e-13	232	257	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt++C+ + tG+C++G++C+FaHg OWM88273.1 232 WKTRICNKWELTGYCPFGSKCHFAHG 257 8************************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 354 aa Download sequence
MDYGPESGNV VHVIPEPWAS EEEYRIWNGT DTPSDTPSNS NHDQRQSQSQ TRSGSEPPSK 60 KSKGTTLDSA SSGNSRSKAI GKMFFKTKLC CKFRSGTCPY ITNCNFAHSI EELRRPPPNW 120 QEIVAAADDE EREEFQIPSV GSVGFNGDSQ RSYKGRHCKK FYTEEGCPYG DNCTFLHDEQ 180 SKNRESVAIS LGPGGYSGGG GGGGGGGGGG GGGGGGAGGG GGAVSNVKPS NWKTRICNKW 240 ELTGYCPFGS KCHFAHGAAE LHRYGGGLLE LESRDASSVP PDAKQGGGGV PMKALTDNEV 300 TAVNSVPHLD VYHMGVPSQR TAIILQRPGQ RAHQKWKGPD KISRIYGDWI DDIE

Sequence ? help Back to Top

Protein Sequence Length: 354 aa Download sequence

MDYGPESGNV VHVIPEPWAS EEEYRIWNGT DTPSDTPSNS NHDQRQSQSQ TRSGSEPPSK  60
KSKGTTLDSA SSGNSRSKAI GKMFFKTKLC CKFRSGTCPY ITNCNFAHSI EELRRPPPNW  120
QEIVAAADDE EREEFQIPSV GSVGFNGDSQ RSYKGRHCKK FYTEEGCPYG DNCTFLHDEQ  180
SKNRESVAIS LGPGGYSGGG GGGGGGGGGG GGGGGGAGGG GGAVSNVKPS NWKTRICNKW  240
ELTGYCPFGS KCHFAHGAAE LHRYGGGLLE LESRDASSVP PDAKQGGGGV PMKALTDNEV  300
TAVNSVPHLD VYHMGVPSQR TAIILQRPGQ RAHQKWKGPD KISRIYGDWI DDIE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32360.1	1e-114	C3H family protein