PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OWM88354.1
Organism
Punica granatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica
Family HD-ZIP
Protein Properties Length: 292aa    MW: 32573.7 Da    PI: 7.7433
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OWM88354.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.65.2e-19134188256
                 T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
    Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                 rk+ +++k+q  +Lee F+++++++ +++  LAk+lgL  rqV vWFqNrRa+ k
  OWM88354.1 134 RKKLRLSKDQSAILEESFKEHNTLNPKQKLALAKQLGLRPRQVEVWFQNRRARTK 188
                 788899***********************************************98 PP
2HD-ZIP_I/II129.71.2e-41134223191
  HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                  +kk+rlsk+q+++LEesF+e+++L+p++K +la++Lgl+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL+kev+eLr +l
   OWM88354.1 134 RKKLRLSKDQSAILEESFKEHNTLNPKQKLALAKQLGLRPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCENLTEENRRLQKEVQELR-AL 223
                  69*************************************************************************************9.55 PP
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    
MVDKDDLGLS LSLSFHQSSC CSHQQQQQQQ QPPPLQLNLM PSLVLSSTPS PSGFASLDRS  60
SGEARSFLRG IDVNRLPSTE DCEEEAGVSS PNSTISTVSG KRSERETNAE DLIAENERAS  120
SRGISDEEDG DTSRKKLRLS KDQSAILEES FKEHNTLNPK QKLALAKQLG LRPRQVEVWF  180
QNRRARTKLK QTEVDCEFLK RCCENLTEEN RRLQKEVQEL RALKLSPQFY MHMTPPTTLT  240
MCPSCERVAV PPGASDPRSI SVVPAHPRPV PVNPWAVPAA PHAPFNVLRP RS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1133139SRKKLRL
2183191RRARTKLKQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16780.15e-92HD-ZIP family protein