PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OWM88361.1
Organism
Punica granatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica
Family MYB
Protein Properties Length: 185aa    MW: 21292.9 Da    PI: 7.762
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OWM88361.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding21.65.2e-071641124
                     TSSS-HHHHHHHHHHHHHTTTT..-H CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg..tW 24
                     +g+WT+eEd++l ++++ +G++  +W
       OWM88361.1 16 KGAWTAEEDQKLSQYIEIHGPKrlRW 41
                     79******************985555 PP
2Myb_DNA-binding53.17.3e-175196148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+ + eE++l+++++k+lG++ W++Ia +++ gRt++++k++w+++l
       OWM88361.1 51 RGNISDEEEDLILRLHKLLGNR-WSLIAGRLP-GRTDNEIKNYWNSHL 96
                     7899******************.*********.************986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 185 aa     Download sequence    
MAPRNDRANA KKVMNKGAWT AEEDQKLSQY IEIHGPKRLR WLNYLRPNIK RGNISDEEED  60
LILRLHKLLG NRWSLIAGRL PGRTDNEIKN YWNSHLSKKI NQKEKTQQPS PAQESAPPPK  120
LVESVQADEN QGTKTTANLD VNFDVNEFFD FSTGGSYGLE WVNKFLELDE DSWMLEKGEG  180
KRGLL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52600.13e-40MYB family protein