PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OWM88526.1

Organism

Punica granatum

Taxonomic ID

22663

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica

Family

LBD

Protein Properties

Length: 203aa MW: 22134 Da PI: 6.7667

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OWM88526.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	146.4	8e-46	44	143	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 +CaaCk+lrr+C++dC++apyfpa+qp+kfa vhk+FGasnv k+l++lpe++r+da+ss+vyeA+ar+rdPvyG+vg i+ lqqq+++l++elal+++ OWM88526.1 44 PCAACKLLRRRCTPDCIFAPYFPAHQPHKFASVHKVFGASNVNKMLQELPEHQRSDAVSSMVYEANARVRDPVYGCVGAISCLQQQIDHLQKELALAQA 142 7**********************************************************************************************9997 PP DUF260 100 e 100 e OWM88526.1 143 E 143 6 PP

Sequence ? help Back to Top
Protein Sequence Length: 203 aa Download sequence
MYMDEEDMMM MRKVLRSDRG SAGGSQGQLT ASSAAAAGAV GPSPCAACKL LRRRCTPDCI 60 FAPYFPAHQP HKFASVHKVF GASNVNKMLQ ELPEHQRSDA VSSMVYEANA RVRDPVYGCV 120 GAISCLQQQI DHLQKELALA QAEVVQLRLR QFGSDANAAT NSPETASPSP TYVLSSSHQS 180 RSFFSMDLVD EASMRPEESL WSC

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G31320.1	1e-55	LBD family protein