PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OWM88692.1

Organism

Punica granatum

Taxonomic ID

22663

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica

Family

MYB

Protein Properties

Length: 456aa MW: 50889.6 Da PI: 8.8037

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OWM88692.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	58.8	1.2e-18	44	91	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT++Ed++l+d++k++G g+W+t ++ g++R++k+c++rw +yl OWM88692.1 44 KGPWTADEDQKLIDYIKKHGHGRWRTLPKNAGLKRCGKSCRLRWTNYL 91 79********************************************97 PP
2	Myb_DNA-binding	55.8	1e-17	97	141	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rgr++ eE+e +++++ lG++ W++Ia++++ gRt++++k++w+++ OWM88692.1 97 RGRFSSEEEEAIIQLHSILGNK-WSAIAARLP-GRTDNEIKNYWNTH 141 89******************.*****.**********97 PP
3	Myb_DNA-binding	26.8	1.2e-08	188	210	24	47
HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 24 WktIartmgkgRtlkqcksrwqky 47 W++Ia++++ gRt++++k++w+++ OWM88692.1 188 WSAIAARLP-GRTDNEIKNYWNTH 210 *******.**********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 456 aa Download sequence
MVNNSKNVGK DALHHHRGHH QRQAGTSPSC ASSEKTASND GLKKGPWTAD EDQKLIDYIK 60 KHGHGRWRTL PKNAGLKRCG KSCRLRWTNY LRPDIKRGRF SSEEEEAIIQ LHSILGNKWS 120 AIAARLPGRT DNEIKNYWNT HIKKRLLRMG IDPVTHAPRL DVLELSSILS SSLYNYTHYP 180 NIPNLLGWSA IAARLPGRTD NEIKNYWNTH IKKRLLRMGI DPVTHAPRLD VLELSSILSS 240 SLYNYTHYPN IPNLLGLIGS SSLNQNKDFL EIAKQLVISQ NISREGPPNY IEPPLAHHLQ 300 NQNQDQHLSA NPISIGDQYY SLPSSSWDNS YGGFGFDQNL MNSSLLGADQ GSFDIGNDSN 360 GYVGLVQSLI DPNSNFQDEN VNIKEVQRLG VAGSSHSSPM SNNSGCTFNS SSTTTRTRTY 420 GASGTCNNED ERDTYGSNSS MYDIINHVSS YVNSIM

Sequence ? help Back to Top

Protein Sequence Length: 456 aa Download sequence

MVNNSKNVGK DALHHHRGHH QRQAGTSPSC ASSEKTASND GLKKGPWTAD EDQKLIDYIK  60
KHGHGRWRTL PKNAGLKRCG KSCRLRWTNY LRPDIKRGRF SSEEEEAIIQ LHSILGNKWS  120
AIAARLPGRT DNEIKNYWNT HIKKRLLRMG IDPVTHAPRL DVLELSSILS SSLYNYTHYP  180
NIPNLLGWSA IAARLPGRTD NEIKNYWNTH IKKRLLRMGI DPVTHAPRLD VLELSSILSS  240
SLYNYTHYPN IPNLLGLIGS SSLNQNKDFL EIAKQLVISQ NISREGPPNY IEPPLAHHLQ  300
NQNQDQHLSA NPISIGDQYY SLPSSSWDNS YGGFGFDQNL MNSSLLGADQ GSFDIGNDSN  360
GYVGLVQSLI DPNSNFQDEN VNIKEVQRLG VAGSSHSSPM SNNSGCTFNS SSTTTRTRTY  420
GASGTCNNED ERDTYGSNSS MYDIINHVSS YVNSIM

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G21440.1	3e-78	MYB family protein