PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OWM88716.1
Organism
Punica granatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica
Family GRAS
Protein Properties Length: 568aa    MW: 63766.1 Da    PI: 6.7574
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OWM88716.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS427.11.4e-1301985671373
        GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaN 99 
                 l++lL++cA+a++++d++  ++++++ +e +s +g+p+qR+ ay+ ++L ar  +s+s++ykal+++e +   s++ l+++++++e++P+lkf++++aN
  OWM88716.1 198 LKQLLIACAKALEDEDFNGFENVVEKAREAVSVSGEPIQRVGAYLIKGLVARKESSGSNIYKALKCKEPD---SKDLLSYMHILYEICPYLKFGYMAAN 293
                 689******************************************************************9...9************************* PP

        GRAS 100 qaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrv 196
                  aI ea  +e+ +HiiDf+i qG+QW++LlqaLa+Rp+gpp++RiTg+++p s+  +   le++g+rL  ++e++++p+efn  +     +++ e+L++
  OWM88716.1 294 GAIAEACRNEDYIHIIDFQIAQGTQWVTLLQALAARPGGPPHVRITGIDDPVSKfaRGVGLEAVGRRLYAICEQFKIPLEFNG-IPVFAPQVKREMLDI 391
                 ***************************************************9999999*************************.5888999******** PP

        GRAS 197 kpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreiv 295
                 +pgEalaVn++lqlh+++de v+++++rd +L+lvkslsPkv ++veqe+++n+++Fl+rf+e++eyy a+f+s+++ l+r+ +eri vE+++l+r+iv
  OWM88716.1 392 RPGEALAVNFSLQLHHTPDEGVDVNNPRDGLLRLVKSLSPKVTTLVEQESNTNTTPFLTRFIETFEYYLAMFESIDVALSRDRKERIDVEQHCLARDIV 490
                 *************************************************************************************************** PP

        GRAS 296 nvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                 n+vaceg+er erhe ++kW++r+++aGF+++pls+++++ +++ll++++ + y++ee++g+++lgWkdr+L+s+SaW
  OWM88716.1 491 NIVACEGKERGERHELFGKWKSRFTMAGFRQYPLSSYVNSVISSLLKRYS-EHYTLEEKDGAMLLGWKDRKLISASAW 567
                 **************************************************.55************************* PP
Sequence ? help Back to Top
Protein Sequence    Length: 568 aa     Download sequence    
MESQKLFAYG LTGTGLSYSA SHPPFPSIPS RLFPPFKFDF GSSPNSPFLT HHESEAFSTL  60
SSSQEQHSSS DNNFSAFSPS SDHSLETSSS NLHRPSGLPV GSYRQNLPCR TSLSRDGNYS  120
QNMKYALLEL ETALMNTDED DEVTAPNASI RTRNIPLQQS TQPQGCISHR RPAEDMRVEK  180
RHKVIKESPI QDFKPSDLKQ LLIACAKALE DEDFNGFENV VEKAREAVSV SGEPIQRVGA  240
YLIKGLVARK ESSGSNIYKA LKCKEPDSKD LLSYMHILYE ICPYLKFGYM AANGAIAEAC  300
RNEDYIHIID FQIAQGTQWV TLLQALAARP GGPPHVRITG IDDPVSKFAR GVGLEAVGRR  360
LYAICEQFKI PLEFNGIPVF APQVKREMLD IRPGEALAVN FSLQLHHTPD EGVDVNNPRD  420
GLLRLVKSLS PKVTTLVEQE SNTNTTPFLT RFIETFEYYL AMFESIDVAL SRDRKERIDV  480
EQHCLARDIV NIVACEGKER GERHELFGKW KSRFTMAGFR QYPLSSYVNS VISSLLKRYS  540
EHYTLEEKDG AMLLGWKDRK LISASAWH
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50600.11e-178GRAS family protein