PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OWM89239.1
Organism
Punica granatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica
Family C3H
Protein Properties Length: 366aa    MW: 39572.5 Da    PI: 7.7184
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OWM89239.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH34.82.8e-11325326
                S---SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH  3 telCrffartGtCkyGdrCkFaHg 26
                 elCr+f+r G C+yG+rC++ H+
  OWM89239.1  3 KELCRNFQR-GSCQYGARCRYLHS 25
                59*******.*************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 366 aa     Download sequence    
MEKELCRNFQ RGSCQYGARC RYLHSTPQQQ QQQRAGGFGF GTRAGFQQQQ NPNPYGFGVK  60
SNSQLKPFSN QWTRNATTPS SRPADNQSQP ANHTCTDPDA CRRLIIEDFQ NERPLWKLTC  120
YGHWRYFPCD IAGDISYEEL RAAAYDDARR GLSVQALVER ERSLLNSKLV EFENLCRNPY  180
VPRSNSNAGE VSSPSLVASA GPPVVSTFSQ AASLSGALGA RPSTPTVAAF GNLSPLAAAA  240
SSSSFSNSGM TPSFFGTNNL QSGSIGTNSS QFPTQMHVNS LPSSAQGSNT SAFGPVSNLF  300
STATVSPQVF NPASNQSSSS FAQTTSEIQL INSMHNGTQP GDTSVWLKEK WNPGEIPEEV  360
PPDAFV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75340.26e-79C3H family protein