PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OWM89319.1

Organism

Punica granatum

Taxonomic ID

22663

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica

Family

MYB

Protein Properties

Length: 267aa MW: 30423.8 Da PI: 5.28

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OWM89319.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	50	6.6e-16	10	63	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT......TTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg......kgRtlkqcksrwqkyl 48 +g+WT++Ed++lv+ v ++G ++W+ Ia+ g ++Rt+k+c++rw +yl OWM89319.1 10 KGPWTEQEDLQLVCFVGLFGDRRWDFIAKVSGlkvagdNNRTGKSCRLRWVNYL 63 79**************************************************97 PP
2	Myb_DNA-binding	54.5	2.6e-17	69	114	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++T++E+ l ++++ ++G++ W++Iar+++ gRt++++k++w++++ OWM89319.1 69 RGKMTPQEERLVLELHSKWGNR-WSRIARKLP-GRTDNEIKNYWRTHM 114 89******************.*****.**********986 PP

Sequence ? help Back to Top
Protein Sequence Length: 267 aa Download sequence
MKTVQEETRK GPWTEQEDLQ LVCFVGLFGD RRWDFIAKVS GLKVAGDNNR TGKSCRLRWV 60 NYLHPDLKRG KMTPQEERLV LELHSKWGNR WSRIARKLPG RTDNEIKNYW RTHMRKKAQE 120 RKRAMSASSS SSSSSNSSSA SGNPTVESIQ STETGEESFY DTGGITTVST EQKSEELEKG 180 EEGYSMDDIW KEIALSEDKN MTSVYDGCYS EEGCNFSCPP MASPSWGYSS NALWHMDDEG 240 NKLFPFVNDQ LFSCYDIVRE SLLTAEL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G59780.3	3e-90	MYB family protein