PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OWM89370.1

Organism

Punica granatum

Taxonomic ID

22663

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica

Family

C2H2

Protein Properties

Length: 252aa MW: 28166.7 Da PI: 8.4959

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OWM89370.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.5	2.4e-05	70	89	1	20
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 ++Cp C k+F+r n++ H+ OWM89370.1 70 FSCPVCAKTFNRYNNMQMHM 89 89*****************9 PP
2	zf-C2H2	11.7	0.00083	155	177	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C +C k+F + + ++H +++ OWM89370.1 155 FSCRKCAKPFAVRGDWRTHEKNC 177 89*****************9987 PP

Sequence ? help Back to Top
Protein Sequence Length: 252 aa Download sequence
MNHQDNFCGV SGEENMVTVA LHIGPPRSCG EGGGDGSSII ASHHNNNGLV DQGQYWIPSP 60 AQILVGPAQF SCPVCAKTFN RYNNMQMHMW GHGSQYRKGP DSLKGTKPAS SMLRLPCYCC 120 AEGCKNNIDH PRSRPLKDFR TLQTHYKRKH GSKPFSCRKC AKPFAVRGDW RTHEKNCGKL 180 WFCICGSDFK HKRSLKDHVR AFGDGHAPHT VESLCEVGEK DCVNNNNNSS YIGDEEFDLG 240 HEVRHGPSSR FY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G13290.1	1e-114	C2H2 family protein