PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OWM89378.1
Organism
Punica granatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica
Family M-type_MADS
Protein Properties Length: 211aa    MW: 23718.8 Da    PI: 8.0732
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OWM89378.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF57.12.4e-181763147
                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEE CS
      SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkly 47
                krie++  r +tfskRr gi KKA+EL  +C+aev vi+fs+tgk +
  OWM89378.1 17 KRIEDNDDRLITFSKRRSGIYKKASELVSMCGAEVGVIVFSPTGKPF 63
                79******************************************955 PP
Sequence ? help Back to Top
Protein Sequence    Length: 211 aa     Download sequence    
MASTSKQTRG KQKIEIKRIE DNDDRLITFS KRRSGIYKKA SELVSMCGAE VGVIVFSPTG  60
KPFSFGHPSV QTVTDKFLGR NIPPPAQNRL QQLFDASEKI RMDIYNYFFN RLLARLDAEK  120
ERGRALSRIT RATSEGTSSN RQLGWWEKPL EELSLSELHE TDSFMETFYR HLCNFLNHPV  180
DLGFLGLANP MVDPTTANDP SSGEEAGAGP C
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.17e-36M-type_MADS family protein