PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OWM89379.1
Organism
Punica granatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica
Family M-type_MADS
Protein Properties Length: 209aa    MW: 23851.2 Da    PI: 8.7109
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OWM89379.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF64.31.3e-201763147
                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEE CS
      SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkly 47
                krie++  r vtfskRr gi KKA+EL +LC+aev v+ifs++gk +
  OWM89379.1 17 KRIEDDDDRLVTFSKRRSGIYKKASELVTLCGAEVGVVIFSPRGKPF 63
                79******************************************955 PP
Sequence ? help Back to Top
Protein Sequence    Length: 209 aa     Download sequence    
MEGTVKKTRG KQKIEMKRIE DDDDRLVTFS KRRSGIYKKA SELVTLCGAE VGVVIFSPRG  60
KPFSFGHPSI QAVANRFLNR NITSVSDHKI QTMVDAHQRM RMDQNVEYLN QLVDLLDAEK  120
NRGKTLSRIA RATREGRSHA HWELGWWEQP LDELSLHELK KVALSMEAFY RDLRNCLNHP  180
IDVASLSLPN PMADLTAIDD PANVKEVQD
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.11e-37M-type_MADS family protein