PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OWM89561.1

Organism

Punica granatum

Taxonomic ID

22663

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica

Family

TCP

Protein Properties

Length: 385aa MW: 40715 Da PI: 8.54

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OWM89561.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	131.1	1.1e-40	81	199	1	115
TCP 1 aagkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg...kaaksaa 95 +a+k+ +++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLlqqa+pa++++tgt++++a+++ + s +s++s+ s++ ++ s OWM89561.1 81 PAPKRASTKDRHTKVDGRGRRIRMPAQCAARVFQLTRELGHKTDGETIEWLLQQAEPAVIAATGTGTIPANFTsLNISLRSAGSSMSAPshfMRSGSYL 179 589*******************************************************************99976666666666444445443333333 PP TCP 96 kskksqksaasalnlakesr 115 +++++ + +++ +n++ + r OWM89561.1 180 NPSFPGAASQQLRNFSLDDR 199 55555555555555555444 PP

Sequence ? help Back to Top
Protein Sequence Length: 385 aa Download sequence
MDEDNGIRRP NFPLQLLERR DSLDLHHPRH HSLSSSSSSI PVAIPVGGGG GTGGSGEPST 60 SRPSSTPGGV LQLSDPVAKK PAPKRASTKD RHTKVDGRGR RIRMPAQCAA RVFQLTRELG 120 HKTDGETIEW LLQQAEPAVI AATGTGTIPA NFTSLNISLR SAGSSMSAPS HFMRSGSYLN 180 PSFPGAASQQ LRNFSLDDRI AYPSAGGEGS YNMNAMLQAK LEPQQNSTHH HQMGNYLLQS 240 STGQTSSLST SHATVVPSTT LWMLANQSSN QVISGEPLWP LTPSGSGNSN NSAATMYRGS 300 MSSGLHFMNF HTPMALLSSQ PMASGSGGTV TDSHLGMLAA LNAFRPVPVS GGGLESPASA 360 TNPHHGAHDD DDEEEGRDTR SRHRS

Sequence ? help Back to Top

Protein Sequence Length: 385 aa Download sequence

MDEDNGIRRP NFPLQLLERR DSLDLHHPRH HSLSSSSSSI PVAIPVGGGG GTGGSGEPST  60
SRPSSTPGGV LQLSDPVAKK PAPKRASTKD RHTKVDGRGR RIRMPAQCAA RVFQLTRELG  120
HKTDGETIEW LLQQAEPAVI AATGTGTIPA NFTSLNISLR SAGSSMSAPS HFMRSGSYLN  180
PSFPGAASQQ LRNFSLDDRI AYPSAGGEGS YNMNAMLQAK LEPQQNSTHH HQMGNYLLQS  240
STGQTSSLST SHATVVPSTT LWMLANQSSN QVISGEPLWP LTPSGSGNSN NSAATMYRGS  300
MSSGLHFMNF HTPMALLSSQ PMASGSGGTV TDSHLGMLAA LNAFRPVPVS GGGLESPASA  360
TNPHHGAHDD DDEEEGRDTR SRHRS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G47620.1	6e-47	TCP family protein