PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OWM89569.1

Organism

Punica granatum

Taxonomic ID

22663

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica

Family

HD-ZIP

Protein Properties

Length: 285aa MW: 32812.4 Da PI: 6.7612

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OWM89569.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	60.9	2.1e-19	90	144	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +k+ +++ eq+++Le+ Fe ++++ e++ +LAk lgL+ rqV +WFqNrRa++k OWM89569.1 90 KKKIRLNMEQVKALEKSFELGNKLDPERKLQLAKALGLQPRQVAIWFQNRRARWK 144 788899************************************************9 PP
2	HD-ZIP_I/II	129.2	1.7e-41	90	182	1	93
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 +kk rl+ eqvk+LE+sFe +kL+perK +la++Lglqprqva+WFqnrRAR+ktkqlEkdy+ Lkr++d+++++n++L++++++L+ee+++ OWM89569.1 90 KKKIRLNMEQVKALEKSFELGNKLDPERKLQLAKALGLQPRQVAIWFQNRRARWKTKQLEKDYDLLKRQFDSIRADNDALQAQNQKLHEEIMA 182 5999************************************************************************************99975 PP

Sequence ? help Back to Top
Protein Sequence Length: 285 aa Download sequence
MDFFPTNFML QPPHEDDQDH HHPSTNSNQI LTCWMPQDQC HGLGATLLGK RSPSMTFPGF 60 EGCGQLESPN GMDHEDLSED DGSSHTLGEK KKIRLNMEQV KALEKSFELG NKLDPERKLQ 120 LAKALGLQPR QVAIWFQNRR ARWKTKQLEK DYDLLKRQFD SIRADNDALQ AQNQKLHEEI 180 MALKGVRDSA THYESINLNK ETEGCGSNRS SRENSSDLLR LNVSTRPPVI DQEHEHARHH 240 HQHQNPVSRQ LFPSSTRFSN IFGGINNDHQ SGLWPWFEQQ QQHLS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	139	147	RRARWKTKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69780.1	8e-84	HD-ZIP family protein