PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OWM89577.1
Organism
Punica granatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica
Family HD-ZIP
Protein Properties Length: 306aa    MW: 33961.6 Da    PI: 4.6468
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OWM89577.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.98.2e-1984137356
                 --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
    Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                 k+++++++q++ Le+ Fe ++ +  e++++LAk+lgL+ rqV +WFqNrRa+ k
  OWM89577.1  84 KKRRLSAHQVQFLERSFEVENRLEPERKAQLAKELGLQPRQVAIWFQNRRARFK 137
                 56689***********************************************98 PP
2HD-ZIP_I/II130.28.1e-4284174292
  HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                  kkrrls++qv++LE+sFe e++LeperK++la+eLglqprqva+WFqnrRAR+ktkq+Ekdy++L+++yd+lk++ ++L ke+e+L++e++
   OWM89577.1  84 KKRRLSAHQVQFLERSFEVENRLEPERKAQLAKELGLQPRQVAIWFQNRRARFKTKQMEKDYDSLRACYDSLKANCDSLLKEKERLKHEVD 174
                  9**************************************************************************************9987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    
MAGGKARTPA SKSKASVKTD NGLLDSIWVP DSSTIFDGSN SMSDFESKLG GASTTPGPAF  60
FQAGDVRNAE EDLELDGCFQ LPGKKRRLSA HQVQFLERSF EVENRLEPER KAQLAKELGL  120
QPRQVAIWFQ NRRARFKTKQ MEKDYDSLRA CYDSLKANCD SLLKEKERLK HEVDSLKDKL  180
LSTGECKEEE NTCLKSGCQL HGEPQELNAG EAPKPQEDAA SAKSDVFDSE SPRLTEPGNS  240
SQGLDPESSE IEDGSSLMIS KSLLAPLSYF PKIEDGYNCS EPAMDYPSCT FGFSSSEDHP  300
FWNWTY
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1132140RRARFKTKQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01470.12e-44HD-ZIP family protein