PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OWM89655.1

Organism

Punica granatum

Taxonomic ID

22663

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica

Family

YABBY

Protein Properties

Length: 162aa MW: 17991.4 Da PI: 8.5019

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OWM89655.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	194.4	5.2e-60	7	160	3	159
YABBY 3 vfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakas....qllaaeshldeslkeelleel.kveeenlksnvekeesastsv 96 +f+ se++CyvqC+fC+til+vsvPs+s ++vvtvrCGhC+sllsvn++kas +lla+ sh +e+ ++ + ++++ + ++ +++s+s + OWM89655.1 7 LFEFSEKICYVQCGFCTTILLVSVPSSSQSMVVTVRCGHCSSLLSVNMMKASfiplHLLASLSH------DEVEAKAeHPTDQAGTRKNPERRSPSVVT 99 57889******************************************999777777888887......22222220223333333333444444444 PP YABBY 97 sseklsenedeevprvpp.virPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaakn 159 s+ s+nede++ v + v++PPekrqr+Psaynrfikeei+r+ka+nP+++h+eafs aakn OWM89655.1 100 SN---SDNEDEDLISVNRtVNKPPEKRQRAPSAYNRFIKEEIRRLKAQNPNMAHKEAFSQAAKN 160 44...67777777666655******************************************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 162 aa Download sequence
MGSINPLFEF SEKICYVQCG FCTTILLVSV PSSSQSMVVT VRCGHCSSLL SVNMMKASFI 60 PLHLLASLSH DEVEAKAEHP TDQAGTRKNP ERRSPSVVTS NSDNEDEDLI SVNRTVNKPP 120 EKRQRAPSAY NRFIKEEIRR LKAQNPNMAH KEAFSQAAKN VS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G23420.1	2e-56	YABBY family protein