PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OWM89717.1

Organism

Punica granatum

Taxonomic ID

22663

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica

Family

MYB

Protein Properties

Length: 223aa MW: 25840.6 Da PI: 8.4971

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OWM89717.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	46.7	7.1e-15	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT eEd++lvd + + G +W+ ++ g+ R++k+c++rw +yl OWM89717.1 14 RGPWTIEEDQKLVDFILKNGIQCWRVVPTLAGLLRCGKSCRLRWINYL 61 89****************************99**********97 PP
2	Myb_DNA-binding	53.9	4.1e-17	67	110	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg T+ E++++++++ +lG++ W++Ia++++ gRt++++k++w++ OWM89717.1 67 RGVLTEAEEDQIIELHSRLGNR-WSKIAAHLP-GRTDNEIKNHWNT 110 6788****************.*****.*********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 223 aa Download sequence
MGRQPCCEKV GLRRGPWTIE EDQKLVDFIL KNGIQCWRVV PTLAGLLRCG KSCRLRWINY 60 LRPDLKRGVL TEAEEDQIIE LHSRLGNRWS KIAAHLPGRT DNEIKNHWNT RIKKRLKLLG 120 LDPQTHEPII HDERPSRKEN AWNADISVKD QQPIPGKEVC RTLKTGANPD PKDTCCSKSL 180 TLKMDESMTQ ENCFPNLIET AESTFSWDSL SELEQIFQYR SHR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G14340.1	9e-79	MYB family protein