PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OWM89776.1

Organism

Punica granatum

Taxonomic ID

22663

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica

Family

MIKC_MADS

Protein Properties

Length: 194aa MW: 22134.1 Da PI: 4.6515

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OWM89776.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	88.7	3.1e-28	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krie+ks rqvtfskRr g++KKA ELS+LCd+eva+++fss+g+lye++s OWM89776.1 9 KRIEDKSSRQVTFSKRRSGLIKKARELSILCDVEVALLVFSSRGRLYEFCS 59 79***********************************************96 PP
2	K-box	33.8	1.5e-12	94	168	25	99
K-box 25 kkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 ++ +e Lq qR + d e+ sl++L++Le++ +l + Rs+K++l++e + lq++e+ l+ee++ L+++++ OWM89776.1 94 RSHTELLQLVQRLIEEPDAETFSLEDLMELEKDFSAALARTRSRKTQLMMEAMISLQEQERLLREEKELLEREVA 168 566778888888888889999**************************************************9986 PP

Sequence ? help Back to Top
Protein Sequence Length: 194 aa Download sequence
MGRKKLEMKR IEDKSSRQVT FSKRRSGLIK KARELSILCD VEVALLVFSS RGRLYEFCSG 60 NSLTSILERY QNYSEEEELK AADAQGCSSE NGGRSHTELL QLVQRLIEEP DAETFSLEDL 120 MELEKDFSAA LARTRSRKTQ LMMEAMISLQ EQERLLREEK ELLEREVAAL MAEDGAEEEA 180 GPSRDPPVTL DLLR

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	132	140	ARTRSRKTQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G10140.2	2e-45	MIKC_MADS family protein