PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OWM89777.1

Organism

Punica granatum

Taxonomic ID

22663

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica

Family

MIKC_MADS

Protein Properties

Length: 255aa MW: 29008.9 Da PI: 8.8499

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OWM89777.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	99.3	1.5e-31	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krienk+nrqvtf+kRrng+lKKA+ELSvLCdaeva+iifs++gklye++s OWM89777.1 9 KRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSTRGKLYEFCS 59 79***********************************************96 PP
2	K-box	95.5	8.7e-32	85	176	9	100
K-box 9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100 ++ea + s+qqe+ kLk+++e Lqr+qR+l+GedL++Ls keL++Le+qL+ slk+iRs++++ +l+q+ elq+ke+ l+e+n++L+++l+e OWM89777.1 85 AQEALELSSQQEYLKLKAKYEALQRTQRNLMGEDLGPLSTKELESLERQLDASLKQIRSTRTQSMLNQLTELQRKEHLLNEANRTLKHRLME 176 455666789*******************************************************************************9986 PP

Sequence ? help Back to Top
Protein Sequence Length: 255 aa Download sequence
MGRGRVELKR IENKINRQVT FAKRRNGLLK KAYELSVLCD AEVALIIFST RGKLYEFCSS 60 SSMLKTLERY QKCNYGAPEP NTMSAQEALE LSSQQEYLKL KAKYEALQRT QRNLMGEDLG 120 PLSTKELESL ERQLDASLKQ IRSTRTQSML NQLTELQRKE HLLNEANRTL KHRLMEGYQL 180 QMNPAGAEDH QQHQHHMAYG VHHHQSPHQP PGNGAFFHPL DCEPTLQIGY QHDPGSVVTA 240 AGPSSATNFM PGWLP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G24260.1	1e-122	MIKC_MADS family protein