PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OWM90103.1
Organism
Punica granatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica
Family MIKC_MADS
Protein Properties Length: 207aa    MW: 24251.6 Da    PI: 9.0427
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OWM90103.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF90.49.4e-29959151
                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
      SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                krien+snrqvt+skRrngi+KKA+E+ vLCda+v++ii++s+gk++ey+s
  OWM90103.1  9 KRIENSSNRQVTYSKRRNGIIKKAKEITVLCDAKVSLIIYASSGKMHEYCS 59
                79***********************************************96 PP
2K-box65.22.4e-2271164199
       K-box   1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
                 y++ sgk+l++ak+e+l++e++++kke+++Lq ++Rhl+Ged++sL+++eL  Le++Le++l+      +e+++++ +++++ e+e++e n  L+++ +
  OWM90103.1  71 YHRLSGKRLWDAKHENLSNEVDRVKKENDSLQIKLRHLKGEDITSLTHRELIALEDALEQGLTC-----SEIVKTHRRNTKMLEEENKELNYILQQQQQ 164
                 778999********************************************************97.....89************************9865 PP
Sequence ? help Back to Top
Protein Sequence    Length: 207 aa     Download sequence    
MGRGKIEIKR IENSSNRQVT YSKRRNGIIK KAKEITVLCD AKVSLIIYAS SGKMHEYCSP  60
STTLVDILEH YHRLSGKRLW DAKHENLSNE VDRVKKENDS LQIKLRHLKG EDITSLTHRE  120
LIALEDALEQ GLTCSEIVKT HRRNTKMLEE ENKELNYILQ QQQQREMAMA AENVKEAEYY  180
QRLRDYHSQG PFAFRVQPFQ PNLQDHM
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G20240.14e-83MIKC_MADS family protein