PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OWM90172.1
Organism
Punica granatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica
Family GRAS
Protein Properties Length: 498aa    MW: 54395.3 Da    PI: 5.7549
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OWM90172.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS334.22.3e-1021074861373
        GRAS   1 lvelLlecAeavss..gdlelaqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykal.ppsetsekn.sseelaalklfsevsPilkfs 94 
                 lv+lL+++Aea++   +++ela+ +L rl+el+sp++ ++m+Rlaa+f+ AL+  l + +s+  +   p  + ++++ +++++aa++l +++sP++kf+
  OWM90172.1 107 LVHLLMAAAEALTGlnKSHELARVILVRLKELVSPTDgSNMERLAAHFAGALQGLLDGATSKHHHVAiPGGAHRDDHhQTDVIAAFQLMQDMSPYVKFG 205
                 68**********98546777************9987769*******************666666555244444444369******************** PP

        GRAS  95 hltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp..slRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledl 189
                 h+taNqaIleav   +rvH++D+di++G+QW++L+qaL sR++gpp  +lRiT++ +  sg  s  +++etg+rL+ fA+++g+pf+f+    ++ e++
  OWM90172.1 206 HFTANQAILEAVVLYRRVHVVDYDIMEGIQWASLMQALVSRKDGPPapHLRITALWRGGSGrrSIGTVQETGRRLSAFATSIGLPFSFHQCRLDSDEKF 304
                 ******************************************776555********9888788999************************9999***** PP

        GRAS 190 eleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqe..adhnsesFlerflealeyysalfdsleaklpreseerikvE 286
                 ++++L++ +gEal+ n++l+l ++  +  ++     ++L+  k+l+P++v++ve+e  ++ +++ F+ rf+++l++ysa++dslea++p + ++r+ vE
  OWM90172.1 305 RPSSLKLVRGEALIFNCMLHLPHFSYRAPDSV---ASFLSGAKTLNPRLVTLVEEEtgSNIGDGGFVGRFMDSLHHYSAIYDSLEAGFPMQGQARALVE 400
                 ***********************985555555...59*******************65566999*********************************** PP

        GRAS 287 rellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveee.sgslvlgWkdrpLvsvSaW 373
                 r++lg++i   +a   +    ++ + ++W ++l e+GF+pv++s ++ +qaklll  ++ dgyrvee  ++ lvlgWk+r+L+s+S W
  OWM90172.1 401 RVFLGPRIAGSLARIYRG-WGNEDRGSSWGKWLAEVGFTPVKISFSNHCQAKLLLGLFN-DGYRVEELaNNRLVLGWKSRRLLSASIW 486
                 **************9998.77788899********************************.******97588999************** PP
Sequence ? help Back to Top
Protein Sequence    Length: 498 aa     Download sequence    
MAVAIHDAPD LDFSGYSTTT ATTDGDYNWN DWSPVVDWDA ISGPVGQDDF HGLIESMMMA  60
GEGSGPGDGM VGMEEGYCCN SESTDSMAVD EEIMMADDGE DFKGLRLVHL LMAAAEALTG  120
LNKSHELARV ILVRLKELVS PTDGSNMERL AAHFAGALQG LLDGATSKHH HVAIPGGAHR  180
DDHHQTDVIA AFQLMQDMSP YVKFGHFTAN QAILEAVVLY RRVHVVDYDI MEGIQWASLM  240
QALVSRKDGP PAPHLRITAL WRGGSGRRSI GTVQETGRRL SAFATSIGLP FSFHQCRLDS  300
DEKFRPSSLK LVRGEALIFN CMLHLPHFSY RAPDSVASFL SGAKTLNPRL VTLVEEETGS  360
NIGDGGFVGR FMDSLHHYSA IYDSLEAGFP MQGQARALVE RVFLGPRIAG SLARIYRGWG  420
NEDRGSSWGK WLAEVGFTPV KISFSNHCQA KLLLGLFNDG YRVEELANNR LVLGWKSRRL  480
LSASIWASSS SSSSDSES
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08250.11e-168GRAS family protein