PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OWM90354.1

Organism

Punica granatum

Taxonomic ID

22663

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica

Family

MIKC_MADS

Protein Properties

Length: 246aa MW: 28261.2 Da PI: 8.5772

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OWM90354.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	100.5	6.4e-32	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krienk+nrqvtf+kRrng+lKKA+ELSvLCdaevaviifs++gklye++s OWM90354.1 9 KRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVAVIIFSNRGKLYEFCS 59 79***********************************************96 PP
2	K-box	102.1	7.3e-34	85	173	12	100
K-box 12 akaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100 ++ ++++qe+ kLk+++e Lqr+qR+llGedL++Ls+keL+qLe+q+e+slk++Rs K++++l+ + +lqk+ek+l e+nkaLrkklee OWM90354.1 85 NDPQNSYQEYMKLKARVEILQRSQRNLLGEDLSPLSMKELEQLEHQVESSLKQVRSAKTHVMLDRLADLQKREKMLLETNKALRKKLEE 173 45799*********************************************************************************987 PP

Sequence ? help Back to Top
Protein Sequence Length: 246 aa Download sequence
MGRGRVELKR IENKINRQVT FAKRRNGLLK KAYELSVLCD AEVAVIIFSN RGKLYEFCSS 60 SSMMKTLERY HQCSYAAMEA THPCNDPQNS YQEYMKLKAR VEILQRSQRN LLGEDLSPLS 120 MKELEQLEHQ VESSLKQVRS AKTHVMLDRL ADLQKREKML LETNKALRKK LEESNTRIPL 180 RLAWDAEDHN DDPYAQYPPQ SEGLNFHPLG GNTTLQIGYT NAIGPNEVNA GATHQNVEGF 240 YNGWML

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G15800.1	3e-97	MIKC_MADS family protein