PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OWM90415.1
Organism
Punica granatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica
Family MYB
Protein Properties Length: 299aa    MW: 33934.1 Da    PI: 7.4646
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OWM90415.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.32.6e-161461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd  lv +++++G+ +W+++++  g+ R+ k+c++rw +yl
       OWM90415.1 14 KGPWTPEEDIVLVSYIQEHGPSNWRSVPANTGLLRCSKSCRLRWTNYL 61
                     79******************************99************97 PP
2Myb_DNA-binding49.88.2e-1667112148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg++T +E++ ++++ ++lG++ W++Ia++++  Rt++++k++w+++l
       OWM90415.1  67 RGNFTDQEEKTIIHLQALLGNR-WAAIASYLP-QRTDNDIKNYWNTHL 112
                      89********************.*********.************996 PP
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    
MGRSPCCDQN GVKKGPWTPE EDIVLVSYIQ EHGPSNWRSV PANTGLLRCS KSCRLRWTNY  60
LRPGIKRGNF TDQEEKTIIH LQALLGNRWA AIASYLPQRT DNDIKNYWNT HLKKKLRKLR  120
PSLDSYSDDR DELTTSLQSS ISRGQWERRL QTDIQMAKQA LCEALSVDSK PINGMNLFKD  180
KPPEQTTAST YASSTQNISR LLEGWMKKPL KPVKTESRMS TTTHCYPANF AANSSSSSGD  240
HETTVFSSNS DAFQSEEHMN EVPAFKLFEK WLLDDGGPGF LNQDDDFMNM PLGEDLSLF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G47600.17e-93MYB family protein