PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OWM90421.1

Organism

Punica granatum

Taxonomic ID

22663

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica

Family

TCP

Protein Properties

Length: 397aa MW: 42297.5 Da PI: 8.7269

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OWM90421.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	132.9	2.9e-41	86	247	2	126
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg........... 88 ++k+++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLlqqa+pa++++tgt++++a+++ + s +ss+s+ s g OWM90421.1 86 PPKRTSTKDRHTKVEGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPAVIAATGTGTIPANFTsLNISLRSSGSSMSVGshlrsnpayfs 184 789******************************************************************999866666776664444455556677777 PP TCP 89 ...................kaaksaakskksqksaasalnlakesr......akarararert 126 + +++ + ++++ + +++l+ + es a++ + r+r OWM90421.1 185 nnpsfsmaqrsrlfpgiglSTEPTPTLLNFQSGNLSNMLQAKPESTslelsdADQESVTRKRR 247 777888888888888888855555555666666666666666655534333322222233333 PP

Sequence ? help Back to Top
Protein Sequence Length: 397 aa Download sequence
MEGGDRHDHQ HHHHHHHLQR PNFPFQLLDK KLEEEACSSS GNNYPSLAIS APNPSPSSNN 60 NNTNNGNRPS TSLQVQPAPD QSKKPPPKRT STKDRHTKVE GRGRRIRMPA LCAARVFQLT 120 RELGHKSDGE TIEWLLQQAE PAVIAATGTG TIPANFTSLN ISLRSSGSSM SVGSHLRSNP 180 AYFSNNPSFS MAQRSRLFPG IGLSTEPTPT LLNFQSGNLS NMLQAKPEST SLELSDADQE 240 SVTRKRRSEQ DLTQHQHGSY LVQSTAGALP ASQIPANFWM LANPNNPQVM SGDPIWTFPQ 300 VNNINSGLYR GAASSGLHFM NFPAPVALLP SQQLGSSGGS GGGLGAEGGQ LSMIAGLNPY 360 RQSAGGGVSE SQASGSQSHH GGGGGGDDRH DAASHHS

Sequence ? help Back to Top

Protein Sequence Length: 397 aa Download sequence

MEGGDRHDHQ HHHHHHHLQR PNFPFQLLDK KLEEEACSSS GNNYPSLAIS APNPSPSSNN  60
NNTNNGNRPS TSLQVQPAPD QSKKPPPKRT STKDRHTKVE GRGRRIRMPA LCAARVFQLT  120
RELGHKSDGE TIEWLLQQAE PAVIAATGTG TIPANFTSLN ISLRSSGSSM SVGSHLRSNP  180
AYFSNNPSFS MAQRSRLFPG IGLSTEPTPT LLNFQSGNLS NMLQAKPEST SLELSDADQE  240
SVTRKRRSEQ DLTQHQHGSY LVQSTAGALP ASQIPANFWM LANPNNPQVM SGDPIWTFPQ  300
VNNINSGLYR GAASSGLHFM NFPAPVALLP SQQLGSSGGS GGGLGAEGGQ LSMIAGLNPY  360
RQSAGGGVSE SQASGSQSHH GGGGGGDDRH DAASHHS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	243	248	TRKRRS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G47620.1	6e-53	TCP family protein