PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OWM90439.1

Organism

Punica granatum

Taxonomic ID

22663

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica

Family

HD-ZIP

Protein Properties

Length: 267aa MW: 30566.4 Da PI: 4.316

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OWM90439.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	60.9	2e-19	40	93	3	56
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k++++t++q++ Le+ Fe+++++ e++ +LA+ lgL+ rqV +WFqNrRa++k OWM90439.1 40 KKRRLTADQVRFLERSFEEENKLEPERKVQLAEDLGLQPRQVVIWFQNRRARWK 93 56789************************************************9 PP
2	HD-ZIP_I/II	127.2	7.2e-41	39	131	1	93
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 ekkrrl+++qv++LE+sFeee+kLeperKv+la++Lglqprqv +WFqnrRAR+ktkqlEkd+e+L+++y++l++e e+L +e+ +Lr+e+++ OWM90439.1 39 EKKRRLTADQVRFLERSFEEENKLEPERKVQLAEDLGLQPRQVVIWFQNRRARWKTKQLEKDFEVLQSSYKSLAAEYETLLEEKGKLRAEVHS 131 69**************************************************************************************99975 PP

Sequence ? help Back to Top
Protein Sequence Length: 267 aa Download sequence
MLSFEDAKGG NGSKRPFFRS FDYEEIADED LEEYFQQPEK KRRLTADQVR FLERSFEEEN 60 KLEPERKVQL AEDLGLQPRQ VVIWFQNRRA RWKTKQLEKD FEVLQSSYKS LAAEYETLLE 120 EKGKLRAEVH SLKEKLEVKD GETESSELSA KLSQEPPQNP GMDSASDGEV SKTPTLSSKQ 180 EDICSAKSDI FDSESPHYAD GSYSSLLDPS DSSYAFEPDQ SDLSQDEDDK LSKNSLVTAN 240 IFPKLEDSNS CNFGFSGLDH AFWSWSY

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	88	96	RRARWKTKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G01470.1	4e-45	HD-ZIP family protein