PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OWM90525.1

Organism

Punica granatum

Taxonomic ID

22663

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica

Family

MYB

Protein Properties

Length: 356aa MW: 39912.8 Da PI: 6.6649

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OWM90525.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	53.3	6.3e-17	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g W++eEde+l ++++++G g+W+++++ g+ R++k+c++rw +yl OWM90525.1 14 KGLWSPEEDEKLFNYITRYGIGCWSSVPKLAGLQRCGKSCRLRWINYL 61 678*******************************************97 PP
2	Myb_DNA-binding	49.9	7.6e-16	67	112	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg ++++E++l++ ++++lG++ W+ Ia+ ++ gRt++++k++w++yl OWM90525.1 67 RGMFSQQEEDLILSLHQLLGNR-WAQIAAQLP-GRTDNEIKNFWNSYL 112 788*****************.*****.***********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 356 aa Download sequence
MGRHSCCLKQ RLRKGLWSPE EDEKLFNYIT RYGIGCWSSV PKLAGLQRCG KSCRLRWINY 60 LRPDLKRGMF SQQEEDLILS LHQLLGNRWA QIAAQLPGRT DNEIKNFWNS YLKKKLMKQG 120 IDPATHKPIT REVEVTCENI SSTGAEHSSL PPPLVINRPN EPAFLLTHPA IDFSLNAGII 180 STDKQTFDPS ATLDFHQAAV TDHPVSYGTA LGTSMRSSNC TGHGSIIGAE SISSDNLASR 240 MSYLFFNESS VTRDYQINND LENTVNAAFS WGSGYCNKVN SSPYQFQQLG ETKSEEASKP 300 SPWSQQEQSV ITSHNALDFG DYHLTSMPED YDVFQDLYAS CTLTSSVDRP LLLQKP

Sequence ? help Back to Top

Protein Sequence Length: 356 aa Download sequence

MGRHSCCLKQ RLRKGLWSPE EDEKLFNYIT RYGIGCWSSV PKLAGLQRCG KSCRLRWINY  60
LRPDLKRGMF SQQEEDLILS LHQLLGNRWA QIAAQLPGRT DNEIKNFWNS YLKKKLMKQG  120
IDPATHKPIT REVEVTCENI SSTGAEHSSL PPPLVINRPN EPAFLLTHPA IDFSLNAGII  180
STDKQTFDPS ATLDFHQAAV TDHPVSYGTA LGTSMRSSNC TGHGSIIGAE SISSDNLASR  240
MSYLFFNESS VTRDYQINND LENTVNAAFS WGSGYCNKVN SSPYQFQQLG ETKSEEASKP  300
SPWSQQEQSV ITSHNALDFG DYHLTSMPED YDVFQDLYAS CTLTSSVDRP LLLQKP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G26660.1	2e-80	MYB family protein