PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OWM90566.1

Organism

Punica granatum

Taxonomic ID

22663

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica

Family

C2H2

Protein Properties

Length: 1383aa MW: 153639 Da PI: 9.0912

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OWM90566.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.7	0.00038	1265	1290	1	23
EEET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt.H 23 y+C C++sF++k +L+ H ++ + OWM90566.1 1265 YSCDieGCSMSFRSKQELVLHKKNiC 1290 89*******************99866 PP
2	zf-C2H2	13	0.00031	1290	1312	3	23
ET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 3 Cp..dCgksFsrksnLkrHirtH 23 Cp Cgk F ++ +L++H r+H OWM90566.1 1290 CPvkGCGKKFFSHKYLVQHRRVH 1312 9999*****************99 PP
3	zf-C2H2	12.6	0.00041	1348	1374	1	23
EEET..TTTEEESSHHHHHHHHHH..T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt..H 23 y+C+ Cg++F+ s++ rH r+ H OWM90566.1 1348 YVCGepGCGQTFRFVSDFSRHKRKtgH 1374 89********************99666 PP

Sequence ? help Back to Top
Protein Sequence Length: 1383 aa Download sequence
MAEPALEVFS WLKNLPLAPE YHPTLQEFQD PIAYIFKIEK EASQYGICKI VPPVPPPPKK 60 STITNLNRSL SARSAGAPTF TTRQQQIGFC PRKPCPVKKP VWQSGETYTY HDFEAKARAF 120 ERSYLKKYAK KNASPSALEI ETLYWKAAVD KPFSVEYAND MPGSAFGPFG SKKAGEGAPL 180 NVGETNWNMR GVSRWKSSLL RFMKEEIPGV TSPMVYLAML FSWFAWHVED HDLHSLNYLH 240 MGAGKTWYGV PRDAAVAFEE VVRVQGYGGE VNPLVTFAIL GEKTTVISPE VLVGVGVPCC 300 RLVQNAGEFV VTFPRAYHSG FSHGFNCGEA ANIATPEWLR VAKDAAVRRA SINYPPMVSH 360 FQLLYDLALA LCSRVPNGIH TGPRSSRLKD KKKGEGESMI KEQFVRDVKQ NNELLHVLGK 420 GSSVVLLPQN AADVSVCSNL RIGSHMSLSL SNPDEDMKSP GTFMADNIMS DRNSGINPLK 480 GSYSMKAKFA SLCERRRALL SGNGDSQTTV QETNNRFTGA QKDALGDMLS DQRLFSCVTC 540 GILTFSCAAI VQPREPAVRY LMSAECSFFN DWTVNSGVPL KRLDVIGGNK SFWGQKPFAG 600 TEEKGVANDL CIVPVYSSNS QLHFPCENEQ MVSSPEQGGT SALGLIGLNY GDSSDSEDDH 660 HEPNGSDPGD ENSLRASPSE NKYRQEILAL PSNANHPSSD FPVGVETNKI EPGSVQGTYG 720 KLTSFNVTSG CSKPILPANE DSSRLHVFCL EHAVEVEQQL QPIGGVDVFL LCHPDYPKVE 780 AEAKLVAAEF GIDNHWNEIS FKNATREDEE RIKSALDSED AIPGSGDWAV KLGINLFYSA 840 SLSWSSLYSK QMPYNSVIYN AFGRNSSSST SPMRLDDCGG KKASRQRNVV AGKWCGRVWK 900 SNQVHPFLAQ EDSEEVEEEE VEEKRSSRAL GTKVEATPVI KKYERKRKKG GSAGPSKRNK 960 CFGKEEVEAS TDSLVDTSKK PKQPGKGKSA KMSFKRGAVV AEDGVDESGP PYQRPPRHKG 1020 AKSVDRDSHD NSNVSLEGHY EEPPSRRIYR PKPAQFTPVE DVNSDVSLSG DSQHERRMLR 1080 GKIMKRVVEE EEDDADEMSD DSVGVKKSFS RRRRGTYESE NDSVEGDKSP SLPRILQNKR 1140 QKQEVAQNML REISQRRQGN PHPIRGRISL PVKQRTPRVS KEVTPRLVKQ ESPRFRNEKE 1200 KFVEEEESEG GPSTRLRRRA SKAAKGTGAK AKANKKQAAS SNRKENPKNP SGLSAGKTRN 1260 NEMEYSCDIE GCSMSFRSKQ ELVLHKKNIC PVKGCGKKFF SHKYLVQHRR VHMDERPLKC 1320 PWSGCKMSFK WAWARTEHLR VHTGVRPYVC GEPGCGQTFR FVSDFSRHKR KTGHSIKGKE 1380 KGL

Sequence ? help Back to Top

Protein Sequence Length: 1383 aa Download sequence

MAEPALEVFS WLKNLPLAPE YHPTLQEFQD PIAYIFKIEK EASQYGICKI VPPVPPPPKK  60
STITNLNRSL SARSAGAPTF TTRQQQIGFC PRKPCPVKKP VWQSGETYTY HDFEAKARAF  120
ERSYLKKYAK KNASPSALEI ETLYWKAAVD KPFSVEYAND MPGSAFGPFG SKKAGEGAPL  180
NVGETNWNMR GVSRWKSSLL RFMKEEIPGV TSPMVYLAML FSWFAWHVED HDLHSLNYLH  240
MGAGKTWYGV PRDAAVAFEE VVRVQGYGGE VNPLVTFAIL GEKTTVISPE VLVGVGVPCC  300
RLVQNAGEFV VTFPRAYHSG FSHGFNCGEA ANIATPEWLR VAKDAAVRRA SINYPPMVSH  360
FQLLYDLALA LCSRVPNGIH TGPRSSRLKD KKKGEGESMI KEQFVRDVKQ NNELLHVLGK  420
GSSVVLLPQN AADVSVCSNL RIGSHMSLSL SNPDEDMKSP GTFMADNIMS DRNSGINPLK  480
GSYSMKAKFA SLCERRRALL SGNGDSQTTV QETNNRFTGA QKDALGDMLS DQRLFSCVTC  540
GILTFSCAAI VQPREPAVRY LMSAECSFFN DWTVNSGVPL KRLDVIGGNK SFWGQKPFAG  600
TEEKGVANDL CIVPVYSSNS QLHFPCENEQ MVSSPEQGGT SALGLIGLNY GDSSDSEDDH  660
HEPNGSDPGD ENSLRASPSE NKYRQEILAL PSNANHPSSD FPVGVETNKI EPGSVQGTYG  720
KLTSFNVTSG CSKPILPANE DSSRLHVFCL EHAVEVEQQL QPIGGVDVFL LCHPDYPKVE  780
AEAKLVAAEF GIDNHWNEIS FKNATREDEE RIKSALDSED AIPGSGDWAV KLGINLFYSA  840
SLSWSSLYSK QMPYNSVIYN AFGRNSSSST SPMRLDDCGG KKASRQRNVV AGKWCGRVWK  900
SNQVHPFLAQ EDSEEVEEEE VEEKRSSRAL GTKVEATPVI KKYERKRKKG GSAGPSKRNK  960
CFGKEEVEAS TDSLVDTSKK PKQPGKGKSA KMSFKRGAVV AEDGVDESGP PYQRPPRHKG  1020
AKSVDRDSHD NSNVSLEGHY EEPPSRRIYR PKPAQFTPVE DVNSDVSLSG DSQHERRMLR  1080
GKIMKRVVEE EEDDADEMSD DSVGVKKSFS RRRRGTYESE NDSVEGDKSP SLPRILQNKR  1140
QKQEVAQNML REISQRRQGN PHPIRGRISL PVKQRTPRVS KEVTPRLVKQ ESPRFRNEKE  1200
KFVEEEESEG GPSTRLRRRA SKAAKGTGAK AKANKKQAAS SNRKENPKNP SGLSAGKTRN  1260
NEMEYSCDIE GCSMSFRSKQ ELVLHKKNIC PVKGCGKKFF SHKYLVQHRR VHMDERPLKC  1320
PWSGCKMSFK WAWARTEHLR VHTGVRPYVC GEPGCGQTFR FVSDFSRHKR KTGHSIKGKE  1380
KGL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	945	949	RKRKK
2	945	982	RKRKKGGSAGPSKRNKCFGKEEVEASTDSLVDTSKKPK
3	946	983	RKRKKGGSAGPSKRNKCFGKEEVEASTDSLVDTSKKPK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G48430.1	0.0	C2H2 family protein