PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OWM90567.1

Organism

Punica granatum

Taxonomic ID

22663

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica

Family

C3H

Protein Properties

Length: 446aa MW: 48100.7 Da PI: 6.071

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OWM90567.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	34.1	4.8e-11	126	149	3	26
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 e C f+ +tGtCk+G+ CkF+H+ OWM90567.1 126 AEDCAFYIKTGTCKFGSLCKFNHP 149 689********************9 PP
2	zf-CCCH	32.6	1.3e-10	176	200	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 + +C++++rtG CkyG Ck+ H++ OWM90567.1 176 RIECKYYLRTGGCKYGKACKYDHPR 200 568********************96 PP
3	zf-CCCH	34.3	3.9e-11	221	245	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 ++++C++++r+G Cky ++C+F+H+ OWM90567.1 221 GEKECPYYMRNGSCKYAANCRFNHP 245 7899********************9 PP
4	zf-CCCH	25.4	2.4e-08	365	391	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C ff++tG Ck+ ++Ck++H++ OWM90567.1 365 PGQPDCAFFLKTGDCKFKSNCKYNHPK 391 5789*********************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 446 aa Download sequence
MAASEESAVA VGHPGDDLGL GCRPSPDPQH APPDLDHEAE NSLSDELLRL VLKESEEAAR 60 LQAADSQEGG AQSGIVYNHG STDNNNTGWE DEKEGERAGE VDDTSEERET GTGVGRYNSF 120 PVRPGAEDCA FYIKTGTCKF GSLCKFNHPV RRRNPHVSAA RERVNVKEEL MDKTGRIECK 180 YYLRTGGCKY GKACKYDHPR TKPSVTPVTE LNFLGLPIRP GEKECPYYMR NGSCKYAANC 240 RFNHPDPTAS GAGGGSGAGT GTDLLGGYGN GSSATLKGLS QPVASWSAPS GTLNETAPFV 300 PAVYPPIGGV APQKAEWSTY QVPVYPPERT MLPPQAYMGK NLGTEATAYT NNKKQMINDE 360 FPERPGQPDC AFFLKTGDCK FKSNCKYNHP KSRIPSSSPV PLSDKGLPLR PVSVLSISLL 420 GLSDLTCCKS CAILPPDWNS SDLEER

Sequence ? help Back to Top

Protein Sequence Length: 446 aa Download sequence

MAASEESAVA VGHPGDDLGL GCRPSPDPQH APPDLDHEAE NSLSDELLRL VLKESEEAAR  60
LQAADSQEGG AQSGIVYNHG STDNNNTGWE DEKEGERAGE VDDTSEERET GTGVGRYNSF  120
PVRPGAEDCA FYIKTGTCKF GSLCKFNHPV RRRNPHVSAA RERVNVKEEL MDKTGRIECK  180
YYLRTGGCKY GKACKYDHPR TKPSVTPVTE LNFLGLPIRP GEKECPYYMR NGSCKYAANC  240
RFNHPDPTAS GAGGGSGAGT GTDLLGGYGN GSSATLKGLS QPVASWSAPS GTLNETAPFV  300
PAVYPPIGGV APQKAEWSTY QVPVYPPERT MLPPQAYMGK NLGTEATAYT NNKKQMINDE  360
FPERPGQPDC AFFLKTGDCK FKSNCKYNHP KSRIPSSSPV PLSDKGLPLR PVSVLSISLL  420
GLSDLTCCKS CAILPPDWNS SDLEER

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G48440.1	2e-98	C3H family protein