PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OWM90597.1

Organism

Punica granatum

Taxonomic ID

22663

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica

Family

NF-YC

Protein Properties

Length: 232aa MW: 25462.7 Da PI: 5.5421

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OWM90597.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	179.5	3.2e-56	39	143	1	102
NF-YC 1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdiv 96 ql++fw++q ie+++dfknh+lPlarikki+kadedv+misaeaP+l++kacelfilelt+rswlhaeenkrrtl+k+diaaa+trtdifdflvdiv OWM90597.1 39 QLQMFWSYQhqeIEQVNDFKNHQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAITRTDIFDFLVDIV 137 89***99889*********************************************************************************** PP NF-YC 97 prdelk 102 prde+k OWM90597.1 138 PRDEIK 143 *975 PP

Sequence ? help Back to Top
Protein Sequence Length: 232 aa Download sequence
MENNPQQPQS SSSAAAAPSS YPGGGAPFHH LLQQQQQHQL QMFWSYQHQE IEQVNDFKNH 60 QLPLARIKKI MKADEDVRMI SAEAPILFAK ACELFILELT IRSWLHAEEN KRRTLQKNDI 120 AAAITRTDIF DFLVDIVPRD EIKDESAVGM VGPPTATGVP YHYPPIGQPA PGLGGMMIGR 180 PAMDPAAGVY MQPPSQAWQS VWQNAAAGED GYAAGPGGGS NQTNLDGQRY VM

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	112	118	RRTLQKN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G48590.1	1e-105	NF-YC family protein