PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OWM90599.1
Organism
Punica granatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica
Family MIKC_MADS
Protein Properties Length: 193aa    MW: 22430.6 Da    PI: 10.4308
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OWM90599.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF86.91.1e-27959151
                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
      SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                krien+s rqvtfskRr+g+lKKA+ELS+LCdaeva++ifsstgk y ++s
  OWM90599.1  9 KRIENSSSRQVTFSKRRTGLLKKAFELSILCDAEVALLIFSSTGKSYQFAS 59
                79**********************************************986 PP
2K-box75.41.6e-25841711299
       K-box  12 akaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
                 +++e +++e+  Lk+  + L+ ++Rhl GedL++Ls++eL+qLe+qL ++++++RskK +++ e+++ l++ +++lqeen++L+k+++
  OWM90599.1  84 RTMEFWRTEIHELKRSADDLEAQLRHLSGEDLSKLSMRELKQLERQLRTGIERVRSKKRRIISEHLNLLKRNQRALQEENNSLEKRVK 171
                 46899******************************************************************************99875 PP
Sequence ? help Back to Top
Protein Sequence    Length: 193 aa     Download sequence    
MGRGKVELKR IENSSSRQVT FSKRRTGLLK KAFELSILCD AEVALLIFSS TGKSYQFASH  60
EMDRTIAKYR NEVGLPDTTN RGCRTMEFWR TEIHELKRSA DDLEAQLRHL SGEDLSKLSM  120
RELKQLERQL RTGIERVRSK KRRIISEHLN LLKRNQRALQ EENNSLEKRV KLRELQDDDQ  180
NVSFLSFGGT SCS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57230.17e-48MIKC_MADS family protein