PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OWM90714.1

Organism

Punica granatum

Taxonomic ID

22663

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica

Family

C2H2

Protein Properties

Length: 413aa MW: 45712.3 Da PI: 7.6826

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OWM90714.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	18.7	4.8e-06	67	89	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C++C++ F r nL+ H r+H OWM90714.1 67 YVCEICNQGFQRDQNLQMHRRRH 89 9*********************9 PP
2	zf-C2H2	14.6	9.4e-05	152	174	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C+k + +s++k H++t+ OWM90714.1 152 WVCERCSKGYAVQSDYKAHLKTC 174 58*******************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 413 aa Download sequence
MLDSPTGPPP PPPPTSSSSD IGFVPSSASD DPNGPPVKRK RRPAGTPDPD AEVVSLSPKT 60 LLESDRYVCE ICNQGFQRDQ NLQMHRRRHK VPWKLLKRDG QDPASAGGAN KVKRVYVCPE 120 PSCLHHDPCH ALGDLVGIKK HFRRKHSNHK QWVCERCSKG YAVQSDYKAH LKTCGTRGHS 180 CDCGRVFSRV ESFIEHQDAC TVRRAILPEP PNSSRTASSM SPLNEPNLSS SLLIPTSPPA 240 TPAMPYKPQE TNSSDYDHLH NLELQLQPTS LVPHKDFSTD LNLSVGLSHT SSEIEESDRA 300 MRLREFAGEQ LRLAAAEKAF AEEARKQARR QVELAEQEFA NAQRIRMQAQ SEFERAHALK 360 EEALRKIASA ITQVTCAACR RQFQAVGGPQ LCEETSTQSL LSSATTTTEG EEE

Sequence ? help Back to Top

Protein Sequence Length: 413 aa Download sequence

MLDSPTGPPP PPPPTSSSSD IGFVPSSASD DPNGPPVKRK RRPAGTPDPD AEVVSLSPKT  60
LLESDRYVCE ICNQGFQRDQ NLQMHRRRHK VPWKLLKRDG QDPASAGGAN KVKRVYVCPE  120
PSCLHHDPCH ALGDLVGIKK HFRRKHSNHK QWVCERCSKG YAVQSDYKAH LKTCGTRGHS  180
CDCGRVFSRV ESFIEHQDAC TVRRAILPEP PNSSRTASSM SPLNEPNLSS SLLIPTSPPA  240
TPAMPYKPQE TNSSDYDHLH NLELQLQPTS LVPHKDFSTD LNLSVGLSHT SSEIEESDRA  300
MRLREFAGEQ LRLAAAEKAF AEEARKQARR QVELAEQEFA NAQRIRMQAQ SEFERAHALK  360
EEALRKIASA ITQVTCAACR RQFQAVGGPQ LCEETSTQSL LSSATTTTEG EEE

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	38	43	KRKRRP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G01940.1	1e-128	C2H2 family protein