PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OWM90942.1
Organism
Punica granatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica
Family HD-ZIP
Protein Properties Length: 829aa    MW: 91279.6 Da    PI: 6.4585
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OWM90942.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.36.4e-192078357
                --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
    Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                k  ++t+eq+e+Le+l++++++ps  +r++L +++    +++ +q+kvWFqNrR +ek+
  OWM90942.1 20 KYVRYTPEQVEALERLYHECPKPSSLRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 78
                5679*****************************************************97 PP
2START181.35.3e-571643722205
                 HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEEEEEXX CS
       START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galqlmvael 98 
                 +aee+++e+++ka+ ++  Wv+++ +++g++++ +++ s++++g a+ra+g+v  +++  v+e+l+d++ W ++++++++l+v+s+g  g+++l +++l
  OWM90942.1 164 IAEETLAEFLSKATGTAVEWVQLPGMKPGPDSIGIVAISHGCTGVAARACGLVGLEPT-RVAEILKDRPSWFRDCRAVDVLNVLSTGsgGTIELLYMQL 261
                 7899******************************************************.8888888888****************************** PP

                 TTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHH CS
       START  99 qalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslvksglaega 193
                 +a+++l+p Rdf+ +Ry+  +++g++v++++S++++q+ p+    +++vRae lpSg+li+p+++g+s +++v+h+dl+ ++++++lr+l++s++  ++
  OWM90942.1 262 YAPTTLAPaRDFWLLRYTSVMEDGSLVVCERSINNTQNGPSmppVQHFVRAEILPSGYLIRPCEGGGSIIHIVDHMDLEPWSVPEVLRPLYESSTLLAQ 360
                 ***************************************9988899***************************************************** PP

                 HHHHHHTXXXXX CS
       START 194 ktwvatlqrqce 205
                 kt++a+l+++++
  OWM90942.1 361 KTTMAALRHLRQ 372
                 *******99876 PP
Sequence ? help Back to Top
Protein Sequence    Length: 829 aa     Download sequence    
MAVTSSCKDG GHKMAMDNGK YVRYTPEQVE ALERLYHECP KPSSLRRQQL IRECPILSNI  60
EPKQIKVWFQ NRRCREKQRK EASRLQAVNR KLTAMNKLLM EENDRLQKQV SQLVYENSYF  120
RQQTQNATLA TTDTSCESVV TSGQHHLTPQ HPPKDASPAG LLSIAEETLA EFLSKATGTA  180
VEWVQLPGMK PGPDSIGIVA ISHGCTGVAA RACGLVGLEP TRVAEILKDR PSWFRDCRAV  240
DVLNVLSTGS GGTIELLYMQ LYAPTTLAPA RDFWLLRYTS VMEDGSLVVC ERSINNTQNG  300
PSMPPVQHFV RAEILPSGYL IRPCEGGGSI IHIVDHMDLE PWSVPEVLRP LYESSTLLAQ  360
KTTMAALRHL RQISQEVSQP NVSGWGRRPA ALRALGQRLS RGFNEAVNGF TDDGWSMLES  420
DGIDDVTLLV NSSPGKMMMG TNLSNYAAGF PSMTSAVLCA KASMLLQNVP PAILLRFLRE  480
HRSEWADSSI DAYSAAAIKA GPCTLPGPRL GSFGSQFMEV IKLENMGHYR DDMIMPSDVF  540
LLQLCNGVDE NAIGTSAELI FAPIDASFSD DAPIIPCGFR IIPLDSKTDP SSPNRTLDLA  600
SALEVKPPGN KTSGDSTGNG NGNSKFVMTI AFQFAFELHL QENIASMASQ YLRSIIASVQ  660
RVALALSPTN IGSQVGLRPP PGTPEAHTLA RWICQSYRCY LGAELLKNEV SDSLLKTLWH  720
HSDAVMCCSL RALPVFTFAN QAGLDMLETT LVALQDITLE KIFDENGRKT LCSEFPQIMQ  780
QGFMCLQGGI CLSSMGRPVS YERAVAWKVM NEEENAHCIC FMFINWSFV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32880.10.0HD-ZIP family protein