PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OWM91241.1
Organism
Punica granatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica
Family M-type_MADS
Protein Properties Length: 195aa    MW: 22033 Da    PI: 6.5168
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OWM91241.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF60.22.5e-19248147
                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEE CS
      SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkly 47
                k++en+  r vtfskRr gi KKA+EL ++C+aev v+ifs++gk +
  OWM91241.1  2 KKVENDDDRMVTFSKRRSGIYKKASELVTMCGAEVGVVIFSPSGKPF 48
                6789****************************************955 PP
Sequence ? help Back to Top
Protein Sequence    Length: 195 aa     Download sequence    
MKKVENDDDR MVTFSKRRSG IYKKASELVT MCGAEVGVVI FSPSGKPFSF GHPSIESIMN  60
KFLKQNGAPI TDNRLQAIFD AHCRMRMEQQ SDGYNELLEQ LDAEKDRGMA LKRITRATRE  120
GNPKNGELGW WERSLDELTL PELKEAASAM EAFHKDLCNY LNHSKDLTAS MPEVPMPSRD  180
PTTAEVETHH FGRLG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.11e-38M-type_MADS family protein