PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OWM91274.1
Organism
Punica granatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica
Family M-type_MADS
Protein Properties Length: 71aa    MW: 7805.15 Da    PI: 8.2114
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OWM91274.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF46.16.1e-151350542
                SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
      SRF-TF  5 nksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                 +  r vtf k +  +lKKA+E S+LC+++ +v+i+++
  OWM91274.1 13 KEKSRRVTFEKGKSSLLKKAKEFSILCGVDTCVLIYGT 50
                567899******************************96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 71 aa     Download sequence    
MGRGTLALEL IGKEKSRRVT FEKGKSSLLK KAKEFSILCG VDTCVLIYGT PAISDRLDVL  60
EIWPPNPDEV A
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G55690.14e-16M-type_MADS family protein