PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OWM91276.1
Organism
Punica granatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica
Family M-type_MADS
Protein Properties Length: 280aa    MW: 31478.1 Da    PI: 9.4598
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OWM91276.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF54.61.4e-171350542
                SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
      SRF-TF  5 nksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                 +  r vtf kR++g+lKKA+E S+LC+++ +vii+++
  OWM91276.1 13 KEKSRRVTFEKRKTGLLKKAKEFSILCGVDTCVIIYGT 50
                567799******************************96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 280 aa     Download sequence    
MGRGRLALEL IGKEKSRRVT FEKRKTGLLK KAKEFSILCG VDTCVIIYGT PAISDCPHVP  60
EIWPPNPDEV ARIINRYKNE VGTGRRSTKI RGAVVGLDEY FLDRQRKLGT ELAKARRSTC  120
DDLIAHLSEE EEVISLKTLL GHRLESAKKR LEAMKSEKEL AALLLPQDQT NNIAPNPLMV  180
GSSQLGESDR RGLIFHQPMP TRSFYVPGAA TGLYCRHDSK PSNDQMLPPT LFQYAANDNP  240
YRYVVQNQMH ANNASLPPPP FNQFHAAHQP QVTVYGTYFH
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58890.12e-18M-type_MADS family protein